RNA id: TU783933


Basic Information

Item Value
RNA id TU783933
length 434
lncRNA type antisense_over
GC content 0.62
exon number 2
gene id G688464
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24591335 ~ 24591789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGAGAtgcgtctccctctctcccagtccaTCTGTTCTCTGTCCAACTGCTGCTCCTGGTGAGTCTCtcgctccatcctctccctctcctgcttcTCGCTCTCCATcagctcccactctctctccgcCCGCTCTCTCTCCAACTGCTCTCTCTCCGCCACCTCTCTCTCCAATTGCTCTCTCTCCAACTGCTCTCTCTCCAACTGCTCTCTCTCCAACTGCTCCTGACGCTCACGCTCCAGGCGATCCCGTTCAACACGCTCCACATGCTGCCTCTCGGcgcgctcccGCTCTCGCTCCTGACGCTCACGGTCTTGACGTTCCCGTTCACGCTCCCTCTCCAGCATCTCACGCTCCAGCCGTTCCCTCTCCTGGCGCTCGTGCTCCAGCCGCTCGCGCTCCATCTCCTTCTGCCTCTGAAGCTCCTGCAGCTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU783914 lncRNA downstream 4622 24562053 ~ 24586713 (-) True G688446
TU783819 lncRNA downstream 141987 24447416 ~ 24449348 (-) False srp09
TU783820 lncRNA downstream 141987 24447595 ~ 24449348 (-) True srp09
TU783843 lncRNA downstream 145217 24445821 ~ 24446118 (-) True G688375
TU783837 lncRNA downstream 156510 24429877 ~ 24434825 (-) True G688369
TU783935 lncRNA upstream 5920 24597709 ~ 24597938 (-) True G688466
TU783936 lncRNA upstream 6357 24598146 ~ 24598442 (-) True G688467
TU783961 lncRNA upstream 60741 24652530 ~ 24652894 (-) True G688491
TU784036 lncRNA upstream 109717 24701506 ~ 24701933 (-) True G688564
TU784055 lncRNA upstream 120676 24712465 ~ 24712754 (-) True G688583
NM_001160617.2 mRNA downstream 142000 24447593 ~ 24449335 (-) False srp09
XM_021612064.2 mRNA downstream 144395 24438967 ~ 24446940 (-) False LOC110529658
XM_021612065.2 mRNA downstream 152688 24436497 ~ 24438647 (-) True LOC110529659
XR_005052842.1 mRNA downstream 179501 24404911 ~ 24411834 (-) True LOC118965504
XM_021612059.2 mRNA downstream 193398 24303092 ~ 24397937 (-) True ncoa1
XM_036985111.1 mRNA upstream 147268 24739057 ~ 24795413 (-) False LOC110529662
XM_036985110.1 mRNA upstream 147268 24739057 ~ 24795414 (-) False LOC110529662
XM_036985108.1 mRNA upstream 147268 24739057 ~ 24795416 (-) False LOC110529662
XM_036985109.1 mRNA upstream 147268 24739057 ~ 24795416 (-) True LOC110529662
XM_021612083.2 mRNA upstream 400746 24992535 ~ 25010299 (-) False LOC110529665
TU783821 other downstream 151135 24438965 ~ 24440200 (-) True LOC110529658
TU783833 other downstream 165782 24425063 ~ 24425553 (-) False G688366
TU783834 other downstream 165782 24425063 ~ 24425553 (-) True G688366
TU783552 other downstream 602481 23988099 ~ 23988854 (-) True G688109
TU783403 other downstream 834425 23754832 ~ 23756910 (-) True G687979
TU783950 other upstream 37765 24629554 ~ 24631049 (-) True G688480
TU784009 other upstream 89178 24680967 ~ 24681426 (-) True G688537
TU784418 other upstream 144257 24736046 ~ 24737040 (-) True G688922
TU784591 other upstream 404976 24996765 ~ 24997835 (-) True LOC110529665
TU785239 other upstream 784333 25376122 ~ 25407347 (-) True G689656

Expression Profile