RNA id: TU784009


Basic Information

Item Value
RNA id TU784009
length 460
RNA type TUCP
GC content 0.58
exon number 1
gene id G688537
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24680967 ~ 24681426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgccatgtaagccggcccaaggagacgcactggagaccagatgcgtagagccggcttcatggcacttggctcgatgctcactctagcccagCCGATACGCGGAGTATGTACCGCACCGTTCCcaccccccaagacatttttggggctgcctctctggcttccttgccagccgtgttccctcatatcgccggctcctctctccggctgcctctgctctcctagcagcctccacctgttcccatggaaggcgatcctttcccgccaggatctcctcccatgtgtagcaacccttgccgtccaatacatcatcccatgtccattcctccttgcgctgctcctgctTCCGCTGcatgtcaccacgccgcttggtcctgttgtggtgggtgattctgtcacggctttcttctgttgaaggagaggcggaccaaaacgcagcgtggttattttgatacatcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU783961 lncRNA downstream 28073 24652530 ~ 24652894 (-) True G688491
TU783936 lncRNA downstream 82525 24598146 ~ 24598442 (-) True G688467
TU783935 lncRNA downstream 83029 24597709 ~ 24597938 (-) True G688466
TU783933 lncRNA downstream 89178 24591335 ~ 24591789 (-) True G688464
TU783914 lncRNA downstream 94254 24562053 ~ 24586713 (-) True G688446
TU784036 lncRNA upstream 20080 24701506 ~ 24701933 (-) True G688564
TU784055 lncRNA upstream 31039 24712465 ~ 24712754 (-) True G688583
TU784056 lncRNA upstream 31562 24712988 ~ 24713254 (-) True G688584
TU784078 lncRNA upstream 50404 24731830 ~ 24732096 (-) True G688605
TU784556 lncRNA upstream 246731 24928157 ~ 24928433 (-) True G689056
NM_001160617.2 mRNA downstream 231632 24447593 ~ 24449335 (-) False srp09
XM_021612064.2 mRNA downstream 234027 24438967 ~ 24446940 (-) False LOC110529658
XM_021612065.2 mRNA downstream 242320 24436497 ~ 24438647 (-) True LOC110529659
XR_005052842.1 mRNA downstream 269133 24404911 ~ 24411834 (-) True LOC118965504
XM_021612059.2 mRNA downstream 283030 24303092 ~ 24397937 (-) True ncoa1
XM_036985111.1 mRNA upstream 57631 24739057 ~ 24795413 (-) False LOC110529662
XM_036985110.1 mRNA upstream 57631 24739057 ~ 24795414 (-) False LOC110529662
XM_036985108.1 mRNA upstream 57631 24739057 ~ 24795416 (-) False LOC110529662
XM_036985109.1 mRNA upstream 57631 24739057 ~ 24795416 (-) True LOC110529662
XM_021612083.2 mRNA upstream 311109 24992535 ~ 25010299 (-) False LOC110529665
TU783950 other downstream 49918 24629554 ~ 24631049 (-) True G688480
TU783821 other downstream 240767 24438965 ~ 24440200 (-) True LOC110529658
TU783833 other downstream 255414 24425063 ~ 24425553 (-) False G688366
TU783834 other downstream 255414 24425063 ~ 24425553 (-) True G688366
TU783552 other downstream 692113 23988099 ~ 23988854 (-) True G688109
TU784418 other upstream 54620 24736046 ~ 24737040 (-) True G688922
TU784591 other upstream 315339 24996765 ~ 24997835 (-) True LOC110529665
TU785239 other upstream 694696 25376122 ~ 25407347 (-) True G689656
TU785268 other upstream 729397 25410823 ~ 25411132 (-) True G689685
TU785308 other upstream 836140 25517566 ~ 25521288 (-) False G689723

Expression Profile