RNA id: TU785239


Basic Information

Item Value
RNA id TU785239
length 2833
RNA type TUCP
GC content 0.43
exon number 4
gene id G689656
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25376122 ~ 25407347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGAAGTTGGAATGTTTTATTAAAAGTACCAAAATCCTTACATTAGTTATATTACAACGTGTAAATGTAAGCCACGAGAACTTTGCATTGTACACACTGCAAAACACAATCatagatggcgccgacagacatggcagctctgcttctagcgcCAAAGCAATTTCGCAGTATTTTGatttttgttatttgttatttctttcattaaaaaaaaaacttccaaaaatagaagcatttcgctacaccggcaataacatctgctaaatatgtgtatgtgaccaataaaatttgatttgatttatacagAAGGTAACGTTTCACAGTTCCAATATTAGTGAATAAAGGTTGACTGCCACCTAGTGGTCAAAAACAAGCTATGCCAAAAGACAGAGGACCCTCTCCATTTTGCCTGTAATCAATATGGGAAAAGTTCTTAATGCTATACAGACAAAATAAAAATGACTGATGTAAGAATTCACAGTACAGTTAAATAAGATTTTCGCTTAAGCATACAGGCTGTGGAAaaatgagtcaacaacattaagTTCCAACTGTCATATTTACAAGTGTGATATCCCTATTGTTATCTTTGGAGGTGTACTTTTTGTCCTTAAGAATCTTGGACATGAGCTTCTCATAGAACCATTGAATATCCTGTGTGTCCTCCGGCCACTGCAGGTACTCCCTCTTCTGGGCAAAGGTCCTAATGCCTTCATGTTTCATCAGTCTGTAATGGGGGACATTCCCCACGACCACCATGATGAGAACATCTCTGAGCTCCTCCAGCATCCTGCTCTGAGCCAGGGTAAAGGCCTCCAGGCACCAGCCGTCCTTGAGGAACTCTTTAGAGACGATACAAACGGTCTTCCTGCTCCCCCATATGGCGTCCCTGATATTGAACAGGTGATCTTCACCTGGGATGAAGTCTCTGACCTCGAAGCAGCAGCGGAGGACGTTTCGCTCCGCGAACTGAGAGTCTAGTCTGTTCAACAGGGCGGTTTCTACCCACTTGTAGTCGTTGTTGCTGAAGCATAAGTAAGCGTCGTACCGAGGCCCATCAGCAGAAGGATCCCTCCTAGGGCCCTCAAGGATCCTGGCAGTCAACTTTTTATAAACTTTGAAGAGGAATCCACGGAGACGAGCGAAAACGATTGATCCGACCATGATCAGGATGATGAGCGCTGTGCAGCCGATGAAGAGCGAGAGCCTCAGCTCCTGAACCAGCCTCTCGTCATCCTCCTCACACGATATGACTGAGCTGAAATTCAACAGGCTGATGCCATGGAGATCTGAAGGAAACTCACAGCTGAATTCATTCACGCCAGGGTCAGGAAAAGTCACGTTAGTCCCTTTCAGCCACGTCAGAAAGTCCTCCAGACCGCAGTCACAGTGGAATTGATTCCTATACAGGTTGATCCAGCTGAGAGAATGGAAAGCTTCTGGGTCAGGAGAGGCCAGGAAATTGTAAGAGAGATCAACCGTTTTGAGAGAATGGAAAGCTTCTGGGTCAGGAGAGGCCAGGAAATTGTAAGAGAGGTCAACTGTTTTGAGACTCTGGACAAATGTCTGGTTTGAGGTATATGAGTGAGTTGAAGTGAAGATCCATCTCTTCCATAGAGATGAGGCCTTTAAATATACCATCTGGGAGAGCCTGCAGGGAGTTAAAGCTTAAAGCCAGGCTTAAAAGCTTGCCAAGATTTTCAAATACATGCATACACTCTCCCCGTTTCACTCAACTTTGAacataaatccaatgacatggtgccATTTGtcgttgatttcacattgaattcacattagttgacaactcaaccaaatgtaaatcaaaaataGACATCGaaatgatgtctgtgcccagtgggatgagaGCATTGGCATAACTCTTATCATATGAGTAAAAAGGGGTATCCTGACACTTTTTAGGTAAACAGCTGAGTGATCGGGTTCGAGAAATGTAACCATTGATGGaacaaggactgaccatctgaGAGTTTTGAAGCTCTACAGTTTTACTTTACAATTACAGTGTTTGCAAACAATTGAGTTAGACAAGCTGACATGTTGGGTTATGATGGGGTTAGTTAGACATAAGCTCGTGAGGCATGTATTCATTCTATTTTTTCAAGAATCAGAAAATTGATGTAGGCCTACCAATCCCAGATTCCCCCTTTAAATGTACTTCTCTAGAGGCTGCAATTCTGAGACATTTTATAAAGTTGCCATCCAAAGAACTGTGACGTGTTAATTGACTCCAAGATGACAGCAATTGTTCATGTCTGGTGCTTCAATGCGTATTGGTGTCTTTGCATTGTAACCCCTCCAAAACaatagtctgggtaccaCTGAACTGAGACGGCAACCAGGCTaccattttttcttcttctgataTATCAACTATTGGCCGACAAAATAATGCAATTATTATAGTAGGCCTAAACAGTAGATTAAATGTAAAAGTTGTGTTACCTGAAGTCATGCGCGCGCTGATAACCCAAATATGCGTCGAGCTGGTGAGTACATTTATGGGATAGGTTACACCCCTCTCAGATAAATCAAGCACTGAGCGGTCCCTTTAGCATGGCCCGGTGCCCCGTGTAAGGTGAAGATTTTATTTTACGACTAATGGAACGAATCCCCCTACTGTTTTTCATAAATTCCTCCCCAGAAACGGGGAGGATCTAACTGCAGACATCATCTCTCAGGCCCCCCGCTATACTGCCACCTACTGGTGGGAATAGTTTATAGACATCATCTCTTAGGCCCTTAAGTTTTCAGGCCCCTCTCCAAtgccaggggcctcatttataaacgtTGTTTATGCACAAAATCTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785242 lncRNA downstream 30900 25344878 ~ 25345222 (-) True G689659
TU785194 lncRNA downstream 58525 25252752 ~ 25317597 (-) True G689620
TU785221 lncRNA downstream 69700 25305639 ~ 25306422 (-) True G689644
TU785178 lncRNA downstream 139879 25233139 ~ 25236243 (-) True G689606
TU785159 lncRNA downstream 154822 25217015 ~ 25221300 (-) True G689593
TU785263 lncRNA upstream 450 25407797 ~ 25408072 (-) True G689680
TU785264 lncRNA upstream 1325 25408672 ~ 25408969 (-) True G689681
TU785266 lncRNA upstream 2382 25409729 ~ 25409976 (-) True G689683
TU785267 lncRNA upstream 2642 25409989 ~ 25410308 (-) True G689684
TU785270 lncRNA upstream 4731 25412078 ~ 25412457 (-) True G689687
XM_021612107.2 mRNA downstream 49824 25323627 ~ 25326298 (-) True LOC110529676
XM_021612109.2 mRNA downstream 55310 25310439 ~ 25320812 (-) True LOC110529677
XM_021612108.2 mRNA downstream 55324 25310439 ~ 25320798 (-) False LOC110529677
XM_021612111.2 mRNA downstream 66339 25307431 ~ 25309783 (-) False LOC110529678
XM_021612110.2 mRNA downstream 66339 25307433 ~ 25309783 (-) True LOC110529678
XM_021612112.2 mRNA upstream 8930 25416277 ~ 25490274 (-) False LOC110529680
XM_021612113.2 mRNA upstream 8930 25416277 ~ 25490274 (-) True LOC110529680
XM_021612115.2 mRNA upstream 90226 25497573 ~ 25503434 (-) False LOC110529682
XM_021612114.2 mRNA upstream 90226 25497573 ~ 25503435 (-) True LOC110529682
XM_021612136.2 mRNA upstream 336677 25744024 ~ 25758345 (-) False LOC110529692
TU784591 other downstream 378287 24996765 ~ 24997835 (-) True LOC110529665
TU784418 other downstream 639082 24736046 ~ 24737040 (-) True G688922
TU784009 other downstream 694696 24680967 ~ 24681426 (-) True G688537
TU783950 other downstream 745073 24629554 ~ 24631049 (-) True G688480
TU783821 other downstream 935922 24438965 ~ 24440200 (-) True LOC110529658
TU785268 other upstream 3476 25410823 ~ 25411132 (-) True G689685
TU785308 other upstream 110219 25517566 ~ 25521288 (-) False G689723
TU785310 other upstream 111116 25518463 ~ 25521288 (-) False G689723
TU785403 other upstream 256818 25664165 ~ 25664665 (-) True G689810
TU785453 other upstream 394617 25801964 ~ 25805475 (-) False LOC110529694

Expression Profile