RNA id: TU784948


Basic Information

Item Value
RNA id TU784948
length 284
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G689393
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25534879 ~ 25535162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagctgtacaggagtaccaagtctaggacaaaaaggctcctcaacagtttttaccccaagccataagacccctgaacaggtaatcaaatggttacccggactatttacattgtgtaccccaacccctcttttacgctgctgctactctctgtttatcatatatgcatagtcactttaactatacattcatgtacatactacctcaattggcccgaccaaccagtgttcccgcacattggctaaccgggctatctgcattgtgtcctgtcacccgccacccgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU784867 lncRNA upstream 19742 25484214 ~ 25515137 (+) True knl1
TU784918 lncRNA upstream 36541 25497597 ~ 25498338 (+) True G689374
TU784896 lncRNA upstream 67197 25467429 ~ 25467682 (+) True G689353
TU784852 lncRNA upstream 120372 25414192 ~ 25414507 (+) True G689311
TU784850 lncRNA upstream 121468 25412001 ~ 25413411 (+) True G689309
TU784950 lncRNA downstream 4182 25539344 ~ 25539646 (+) True G689395
TU784951 lncRNA downstream 5637 25540799 ~ 25541075 (+) True G689396
TU784952 lncRNA downstream 6011 25541173 ~ 25541404 (+) True G689397
TU784983 lncRNA downstream 149363 25684525 ~ 25685894 (+) True LOC110529690
TU785049 lncRNA downstream 178250 25713412 ~ 25713643 (+) True G689490
XM_021612122.2 mRNA upstream 3776 25527213 ~ 25531103 (+) False LOC110529685
XM_021612121.2 mRNA upstream 3776 25527221 ~ 25531103 (+) True LOC110529685
XM_021612119.2 mRNA upstream 13555 25517487 ~ 25521324 (+) False LOC110529684
XM_021612120.2 mRNA upstream 13555 25517504 ~ 25521324 (+) True LOC110529684
XM_021612117.2 mRNA upstream 19677 25505013 ~ 25515202 (+) False knl1
XM_036985168.1 mRNA downstream 17275 25552437 ~ 25570638 (+) False LOC110529217
XM_036985167.1 mRNA downstream 17275 25552437 ~ 25584436 (+) False LOC110529217
XM_036985164.1 mRNA downstream 17275 25552437 ~ 25587302 (+) False LOC110529217
XM_036985165.1 mRNA downstream 17275 25552437 ~ 25587302 (+) False LOC110529217
XM_036985166.1 mRNA downstream 17275 25552437 ~ 25587302 (+) True LOC110529217
TU784318 other upstream 473429 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 550053 24982729 ~ 24984826 (+) True G688613
TU782829 other upstream 1543880 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other upstream 1543880 23984445 ~ 23990999 (+) False LOC110529210
TU781994 other upstream 2010844 23484432 ~ 23524035 (+) True LOC110529640
TU784988 other downstream 143490 25678652 ~ 25681727 (+) False LOC110529690
TU785811 other downstream 598029 26133191 ~ 26195544 (+) True LOC110529702
TU786082 other downstream 845966 26381128 ~ 26383426 (+) True LOC110529706
TU787679 other downstream 2021122 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 2360539 27895701 ~ 27895987 (+) True G692343

Expression Profile