RNA id: TU785334



Basic Information


Item Value
RNA id TU785334
length 850
lncRNA type antisense_over
GC content 0.34
exon number 3
gene id G689747
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25586381 ~ 25587286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATTTTATTGTATTTAGAGTATTTTTATAGCCTACTAAATCCCTGATTAGCATAGCCTTTTTTAAATGACAGTGTTAATGCAGAGTGCGATAAGAAACAATAACTGTTACAAAAGAGACTAGAGCAAATTATCACTATAACATTGTTGTGTCTGGAAAAACAGGTGAGTTTATTATTATGGTCTATCTATGCTGTTACCTTTATATTTAATGGCTAACTGATCATGAACCAATATTCATTACAGTCATTACAACAATGCTTGGCTGTAGGCAAAAGAGGCCCTCTATTTGCCAAATGAAATGAGGGGCCCTCTATTTGCTAAATTAAATGAGGGGCCCTCTATTTGCTAAATTAAATGAGGGTCTGTATCAACAAGTAAACATAACATGTAGACCTACTGTAAACATTTGTCTCAGTATCAAATTGAAACATTCTATACATAGACATGTTGATTATTGTCAATTAATGTATAATATTTCAATGAAATTGTGTCCAATACATTGAATGTCCATGATGAAATTGTAACATGCAAATTATCCCATCATTATCATCCATACTTCCTGGGGTTGGTTGCAAAGCAGTTCCTGTCATATCATTGTCAAATCCTGTTATTGATGTAGTAAATCATACAAAGACCCCACTATAGGGGGTTAATAAGGAAGTCTCCATTTTGAAAAACAAGCATCACCTAGGTTCGTTGAAAAAAGTATGAAAAACATGCATGGCTGATATAGATATTTGTAAGTACAGTATAATGTTAATGTATACCATAGTATTTGTTTGGCAGACAGGGGTGGAGCACTGGAAGATGCCGTCAACAGTCATTGTTTCTTTTTGCCTTTGGCCTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU785329 lncRNA downstream 43785 25542299 ~ 25542596 (-) True G689742
TU785328 lncRNA downstream 44995 25541087 ~ 25541386 (-) True G689741
TU785324 lncRNA downstream 51150 25534957 ~ 25535231 (-) True G689737
TU785309 lncRNA downstream 65093 25519159 ~ 25521288 (-) True G689723
TU785315 lncRNA downstream 71227 25514401 ~ 25515154 (-) True G689728
TU785373 lncRNA upstream 60852 25648138 ~ 25651980 (-) True G689780
TU785392 lncRNA upstream 65727 25653013 ~ 25653367 (-) True G689799
TU785401 lncRNA upstream 75202 25662488 ~ 25662707 (-) True G689808
TU785417 lncRNA upstream 94458 25681744 ~ 25682799 (-) True G689820
TU785420 lncRNA upstream 97236 25684522 ~ 25684796 (-) True G689822
XM_021612114.2 mRNA downstream 82946 25497573 ~ 25503435 (-) True LOC110529682
XM_021612115.2 mRNA downstream 82947 25497573 ~ 25503434 (-) False LOC110529682
XM_021612112.2 mRNA downstream 96107 25416277 ~ 25490274 (-) False LOC110529680
XM_021612113.2 mRNA downstream 96107 25416277 ~ 25490274 (-) True LOC110529680
XM_021612107.2 mRNA downstream 260083 25323627 ~ 25326298 (-) True LOC110529676
XM_021612136.2 mRNA upstream 156738 25744024 ~ 25758345 (-) False LOC110529692
XM_021612135.2 mRNA upstream 156738 25744024 ~ 25758350 (-) True LOC110529692
XM_021612138.2 mRNA upstream 171591 25758877 ~ 25775027 (-) False LOC110529693
XM_021612137.2 mRNA upstream 171591 25758877 ~ 25775028 (-) True LOC110529693
LOC110529218 mRNA upstream 209614 25796900 ~ 25800394 (-) True LOC110529218
TU785308 other downstream 65093 25517566 ~ 25521288 (-) False G689723
TU785310 other downstream 65093 25518463 ~ 25521288 (-) False G689723
TU785268 other downstream 175249 25410823 ~ 25411132 (-) True G689685
TU785239 other downstream 179034 25376122 ~ 25407347 (-) True G689656
TU784591 other downstream 588546 24996765 ~ 24997835 (-) True LOC110529665
TU785403 other upstream 76879 25664165 ~ 25664665 (-) True G689810
TU785453 other upstream 214678 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other upstream 214744 25802030 ~ 25805475 (-) True LOC110529694
TU785641 other upstream 377893 25965179 ~ 25965493 (-) True G690033
TU785681 other upstream 403392 25990678 ~ 25991143 (-) True G690073

Expression Profile