RNA id: TU785629


Basic Information

Item Value
RNA id TU785629
length 508
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G690021
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25955763 ~ 25956270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatttgatacactgccgattttcctACTtaaaaagcatgtagaggtctgtaatctTTCACaaatacacttcaactgtgagagacggaatctaaaacaaaaatccagaaaatcacattgtatgattttaaagtaattaattaacattttattgcatgacataagtacttgatacatcagaaaagcagaacttaatatttggtacagaaacctttgtttgcaattacagagatcatacgtttcctgtagttcttgaccaggtttgcacacactgcagcagggattttggcccactcctccatacagaccttctccagatccttcaggtttcggggctgtcgctgggcaatacggactttcagccccctccaaaaatgttctattgggttcaggtctggagactggctaggccactccaggaccttgagatgctttttacggagccactcctcagttgccctggctgtgtgtttcgggtcgttgtcatgctggaagacccagccacgacc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785617 lncRNA downstream 11818 25943736 ~ 25943945 (-) True G690009
TU785589 lncRNA downstream 34280 25920824 ~ 25921483 (-) True G689981
TU785574 lncRNA downstream 47455 25907992 ~ 25908308 (-) True G689966
TU785502 lncRNA downstream 144366 25811055 ~ 25811397 (-) True G689895
TU785489 lncRNA downstream 176401 25779126 ~ 25779362 (-) True G689883
TU785655 lncRNA upstream 17269 25973539 ~ 25973784 (-) True G690047
TU785682 lncRNA upstream 35456 25991726 ~ 25992018 (-) True G690074
TU785684 lncRNA upstream 36217 25992487 ~ 25992877 (-) True LOC110529697
TU785701 lncRNA upstream 43989 26000259 ~ 26000550 (-) True G690093
TU785704 lncRNA upstream 50851 26007121 ~ 26007345 (-) True G690096
XM_036985175.1 mRNA downstream 82086 25854580 ~ 25873677 (-) True LOC110529696
XM_036985176.1 mRNA downstream 82107 25854580 ~ 25873656 (-) False LOC110529696
XM_021612140.2 mRNA downstream 150193 25801320 ~ 25805570 (-) False LOC110529694
XM_036985174.1 mRNA downstream 150330 25801320 ~ 25805433 (-) False LOC110529694
LOC110529218 mRNA downstream 155369 25796900 ~ 25800394 (-) True LOC110529218
XR_002474428.2 mRNA upstream 36154 25992424 ~ 25997066 (-) False LOC110529697
XR_005052847.1 mRNA upstream 36154 25992424 ~ 25998685 (-) False LOC110529697
LOC110529219 mRNA upstream 50612 26006882 ~ 26017782 (-) True LOC110529219
XM_036985177.1 mRNA upstream 131176 26087446 ~ 26094609 (-) True LOC110529220
XM_021612146.2 mRNA upstream 138671 26094941 ~ 26106801 (-) True LOC110529700
TU785453 other downstream 150288 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 150288 25802030 ~ 25805475 (-) True LOC110529694
TU785403 other downstream 291098 25664165 ~ 25664665 (-) True G689810
TU785308 other downstream 434475 25517566 ~ 25521288 (-) False G689723
TU785641 other upstream 8909 25965179 ~ 25965493 (-) True G690033
TU785681 other upstream 34408 25990678 ~ 25991143 (-) True G690073
TU786474 other upstream 472845 26429115 ~ 26430843 (-) True cenpw
TU787231 other upstream 907940 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 1359298 27315568 ~ 27315935 (-) True G691747

Expression Profile