RNA id: TU785932


Basic Information

Item Value
RNA id TU785932
length 3734
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G690280
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26162614 ~ 26166381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTTGTTCAGAGACTTACTGCTAGCCATGTTAGCCATGGTGGCGTCTAGGTCCCCTCCCATATGTTTAACTGGAGATGAGGCGGCCCCAGTCTGGGGCGTCATGGCAGGCATCATCACATCCCCTAGACCATCAAACGCTACAGGAgacacatggggggggggggagagagagagagagagagagagagagagagagagaggtgagaaacaGCCACAATAATCCTCTCTGATCATAACAGAGGGGTCCTCCTTACGAGTGGGATTACCATGACAACCCATCGAGATGGTCTCCATGACAACAGTGATCAGAGAGGAGCACAACATTGGAATGTTAACAAGAGGCAAGTTCTCATACTGATACTCAGTATGACTGAGGGCTTATACTgtgcctcaacacacacacacacacagtttaagtGATACTCTCCATGTAATATAAATCAACAGCAAAAATATGCTGTCTACTCAACTCTACTAAATAGTATTACTATCCTATTAGCTAGCTTGTTTGAGATGGGGCATCATCCTTTGTATCTTGGTGACAGTAAGGATGCAGCCACCACTCTAGAGGGAGGAAACAGTGCCAAGCTAAATGGGCATTGTGATGTGAGCATCTCACACACCCTATTTATCAGGCATCTGTCAGAGCAGAGGGAAAATAACAGCAGCAGTCGCTCTCTTACTGCAATGCAGCAATGCACTGTGGGAAACAGCGCATCAATGAGCCAGAACACTCACCCAATCAGAGAGCAGGAAGCAAGCAATGAGCCAGCCCCAGagccagatggagagagagaggagcaatagagggacgagagagaaagagagaaatggaacgtgagagaggacaaagagtgtgagagagagcgcgTAAGTGAGTGAGATAAAgtgcagagggaaagagagagaacagagggagggagggaaagagggagaggatgtAAGGGTAAGAAGAAAGGGACAGAAGGACAGTAGTGGAGGGAAAAATAATGGAGTGAGTTAAGAGATGATAAATgttgcgagagaaagagagatggaggagagagagagagagagttaaggctTAAGCAGTAGTACTTGCAGGTCGTCATTTACATAACATGCAGGGCAGTGACAGCCTTGATCATAAACCTGGTAAGCACAGGGAACGTTGCCACgataaaatgtgaaaaagtcaacCAATGCACgcatcaacagagagagacaactatGGAAAGAATCTAGAATGAAAATGACCATACACAACTGCATGTGCATTGGCCATAAAACCAAGGTATGTTCACAAGATACATACACTCAGGATGTATTCATTCAGACAGACatgttcatatacagtaccagtcaaaagtttggacacacctactcattcaagagtttctttatttttactattttatacattgtagaataatagtgaagacatcaaaactatgaaataacacatggaatcaggtagtaaccaaaaaaagtgttaaaacaaatcaaaatatattttatacttgaaattcttcacagtagccacactttgccttgatgacagctttgcacactcttgatgacagctttgcacactcttgatgacagctttgcacactcttgatgacagctttgcacactcttggaattctctcaaccagcttcatgaggaatatattttcaacggtcttgaaggacttcccacatatgctgagcacttcttggctgcttCACTTTGTGGTCcaactcaattgggttgaggttgggtgattgtggaggccaggtcatctgatgcagcactccatcactctcccatcttggtcaaacagcccttacctgccctccaggacacctacaacacccgatgtcacaggagggCAAAAAATATAATTAAGGTCATTAACCACcgaagccactgcctgttcaccctgcttccatccagaaggcgaggtcagtacaggtgcatcaaagctgggacagagagatagaagctgtttttcaatctcaaggccatcagattgtttaacagccatcactagcacagagaggcggatgcttacctacagacttgatatcattggccactttaataaatggaacacaagtcactttaataatggcactttaagaatgtttacgtatcttgcattacttatctcatatgtacagttgaagtcggaagtttacatacacttaggttggagtcattaaaacttatttcttgtttacaaactataggtttggcaagtcggttaggacatctactttgtgcatgacacaagtcatttttccaacaattgtttacagagagattatttcacttataattcactgtatcacaattccagtgggtgagaagtttacatacactaagttgactgtgactttaaacagcttggaaaattccaggaatgatgtcatggctttagaagcttctgataggctaattgacatcctttaagtcaattggaggtgtacctgtggatgtatttcaaggcctacctttaaactcagtgcttcttttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaaataaattgtagacctccacaagcctggttcatccttgggagcaatttccaaatgcctgaaggtaccacgttcatctgtacaaacaacacagcctggaggtgtgttttgggttattgttctgttgaaaaacaaatgatagtcccactatgcgcaaaccacatgggatggcgtatcgctgcagaatactgtggtagccatcctagttaagtgtgccttgaattttaaataaatcactgacagtgtcaccagcaaagcacccccacaccacctcctctgtgcttcacggttttaaccacacatgaggagatcatcctttcacctactctgcgcctcacaaagacacggcggttagaaccaaaaatctcaaatttggcctCACCAGatcaaatgacagatttccaccggtctaatgtctgtTGCTCGTGACCCAAGCAAgtattttcttcttattggtgtcctttagtagtggtttctttgcagcaactcaaccatgaaggcctgattcacagtctcctctgagcagttAATGTTGATAtctgtgttacttgaactctgaaacatttatttgggctgcaatttatgaggctggtaacgctaatgaacttattctccacagcagaggtaactctgggtcttcctttcctgtggcggtcctcatgagagccagtttcatcatagcgcttgatggttttgcggctgcacttgaagaaactttcaaagttcttgacattttctgtattgactgaccttcaggtcttaaagtaatgaaggactgtcatttctctttgcttatttcagctgttcatgccataatatggacttggtcttttaccaaatagggctatcttctgtataccacccctacctagtTACAACATAACCgcttggctcaaatgcattaagaaggaaagaaattccacaaattaacttttaacaaggcacacctgtcaattgaaatgcattccaggtgactaccttatgaagctggttgagagaatgcaaagagtgtgcaaagctgtcatcaaggcaaagggtggctacttaaagaatctaaaatacatttagttttgttttacactatttttggttactacatgattccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatataaagaattATATATAATTACTATATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785884 lncRNA downstream 89472 26072870 ~ 26073142 (-) True G690237
TU785873 lncRNA downstream 99513 26062874 ~ 26063101 (-) True G690231
TU785861 lncRNA downstream 126841 26035519 ~ 26035773 (-) True G690219
TU785724 lncRNA downstream 139830 26022582 ~ 26022784 (-) True G690115
TU785721 lncRNA downstream 142366 26020049 ~ 26020248 (-) True G690112
TU786395 lncRNA upstream 73381 26239762 ~ 26240225 (-) True G690691
TU786396 lncRNA upstream 74250 26240631 ~ 26240834 (-) True G690692
TU786397 lncRNA upstream 75542 26241923 ~ 26242172 (-) True G690693
TU786408 lncRNA upstream 78129 26244510 ~ 26244983 (-) False G690697
TU786409 lncRNA upstream 78129 26244510 ~ 26244921 (-) True G690697
XM_036986843.1 mRNA downstream 40334 26120465 ~ 26122280 (-) True LOC110531082
XM_021612146.2 mRNA downstream 55813 26094941 ~ 26106801 (-) True LOC110529700
XM_036985177.1 mRNA downstream 68005 26087446 ~ 26094609 (-) True LOC110529220
LOC110529219 mRNA downstream 144832 26006882 ~ 26017782 (-) True LOC110529219
XR_005052847.1 mRNA downstream 163929 25992424 ~ 25998685 (-) False LOC110529697
XM_021612155.2 mRNA upstream 6065 26172446 ~ 26175639 (-) True LOC110529703
XM_021612161.2 mRNA upstream 256114 26422495 ~ 26426074 (-) True LOC110529708
XM_021612162.2 mRNA upstream 262659 26429040 ~ 26430888 (-) False cenpw
XM_021612163.2 mRNA upstream 277736 26444117 ~ 26463156 (-) False LOC110529710
XM_021612164.2 mRNA upstream 277736 26444117 ~ 26463156 (-) False LOC110529710
TU785681 other downstream 171471 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 197121 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 357139 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 357139 25802030 ~ 25805475 (-) True LOC110529694
TU785403 other downstream 497949 25664165 ~ 25664665 (-) True G689810
TU786474 other upstream 262734 26429115 ~ 26430843 (-) True cenpw
TU787231 other upstream 697829 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 1149187 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 1949355 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 2312436 28478817 ~ 28481898 (-) True si:dkey-85n7.8

Expression Profile