RNA id: TU786406


Basic Information

Item Value
RNA id TU786406
length 1602
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G690696
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26246327 ~ 26250741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taccgcagtgcatcccctcctcatggactgcaccagatttgccagttcttgctgtgagatgttaccccactcttccaccaaggcacctgcaagttcctggacatttctggggggaatggccctagccctcaccctccgatccaacaggtcccagacgtgctcaatgggattgagatccgggctcttctctggccatggcagaacactgacattccggtcttccaggaaatcacgcacagaacgagcagtatggctggtagcattgtcatgctggagggtcatgtcaggatgagcctgcaggaagggtaccacatgtgggaggaggatgtcttccctgtaacgcacagcgttgagattgcctgcaataacaacaagctcagtccgatgatgctgtgacacaccgccccagaccatgacggaccctccaccttcaaatcgatcccgctccagagtacaggcctcggcgtAAGGCTCAATCCTTTGATGATAGATCGGAATcccaccatcacccctggtgagacaaaaccgcgactcgtcagtgaagagcactttttgccagtcctgtctggtccagcgacggtgggtttgtgcccataggcgacgttgttgccggtgacgtctggtgaggacctgccttacaacaggcctacaagccttcagtccagcctctctcagtctattgcggacagtctgagcactgatggagggattgtgcgttcctggtataactcgggcagttgttgttgccatcctgtaccggtCCTGCTGGTGTGAGGTCCGGATATACCGATCctctgcaggtgttgttacacgtggtctgccactgcgaggacgatcagctgtctgtcctgtctccctgtagcgctgccttaggcgtctcacattacggacattgcaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgcctaaggcacgttcacgcagatgagaagggaccctgggcatctttcttttggtgtttttcagagtcagtagaaaggcctctttagtgtcctaagttttcataactatgaccttaattgcctaccacctgttagctgttagtgtcttagcgaccgttccacaggtgcatgttcattaattgatcatggttcattgaacaaacatgcaaaacagtgtttaaaccctttacaatgaagatctgtgaagttcttttgatttttacaaataatctttgaaagacagggtcctgaaaaaaggatgtttctttttttcctGAGTTAATGTACAAGAGCTAGCAATATCTATACCACAATGCAGTTGTGAGCATACTAGGCATTCTATATTATACTACAACATCAGTCTAACTGAATTTGGATGTTGTGTTGGCTGAATGTTCCAGGCAGGTTCCAGAGTGTTCTTCAGCTGGTGAACCTCGTCTTGTAGGGTAATGGAAGCTGGTGTTGCAGACTGACGCTGTGGCGATGTTGGCAGGAATGTTGGGTTTGGGGAGCTGTGTCTCTGGCTCCTTGTAGACAACATTCTAAGTTGTTTTGCACTCCACAGACAGGTGGACAAGCCTCTCCCTGAAGTGGGGGGTTCTGGGCTCATACACTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU786408 lncRNA downstream 1374 26244510 ~ 26244983 (-) False G690697
TU786409 lncRNA downstream 1436 26244510 ~ 26244921 (-) True G690697
TU786397 lncRNA downstream 4185 26241923 ~ 26242172 (-) True G690693
TU786396 lncRNA downstream 5523 26240631 ~ 26240834 (-) True G690692
TU786395 lncRNA downstream 6132 26239762 ~ 26240225 (-) True G690691
TU786410 lncRNA upstream 5203 26253161 ~ 26253395 (-) True G690698
TU786411 lncRNA upstream 5786 26253744 ~ 26253986 (-) True G690699
TU786412 lncRNA upstream 8123 26256081 ~ 26256621 (-) True G690700
TU786418 lncRNA upstream 16956 26264914 ~ 26326435 (-) True G690705
TU786499 lncRNA upstream 104456 26352414 ~ 26352739 (-) True G690776
XM_021612155.2 mRNA downstream 70718 26172446 ~ 26175639 (-) True LOC110529703
XM_036986843.1 mRNA downstream 124077 26120465 ~ 26122280 (-) True LOC110531082
XM_021612146.2 mRNA downstream 139556 26094941 ~ 26106801 (-) True LOC110529700
XM_036985177.1 mRNA downstream 151748 26087446 ~ 26094609 (-) True LOC110529220
LOC110529219 mRNA downstream 228575 26006882 ~ 26017782 (-) True LOC110529219
XM_021612161.2 mRNA upstream 174537 26422495 ~ 26426074 (-) True LOC110529708
XM_021612162.2 mRNA upstream 181082 26429040 ~ 26430888 (-) False cenpw
XM_021612163.2 mRNA upstream 196159 26444117 ~ 26463156 (-) False LOC110529710
XM_021612164.2 mRNA upstream 196159 26444117 ~ 26463156 (-) False LOC110529710
XM_021612167.2 mRNA upstream 196159 26444117 ~ 26463156 (-) False LOC110529710
TU785681 other downstream 255214 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 280864 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 440882 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 440882 25802030 ~ 25805475 (-) True LOC110529694
TU785403 other downstream 581692 25664165 ~ 25664665 (-) True G689810
TU786474 other upstream 181157 26429115 ~ 26430843 (-) True cenpw
TU787231 other upstream 616252 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 1067610 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 1867778 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 2230859 28478817 ~ 28481898 (-) True si:dkey-85n7.8

Expression Profile