RNA id: TU785958


Basic Information

Item Value
RNA id TU785958
length 2447
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G690304
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26248083 ~ 26250529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaacttgttcagtttatgtctcagttgttgaatcttgttatgttcatacaaatatttacacgtgaaGTTTGCTGGAactaaacgcagttgacagtgagaggactatGCATCAACAGCATCACCTCTGAGGTTGCGAACATGAGAGTATGCCCCAAAAAATGTGCACTCACATCCAGTCAGTAAAAACCTTGGTCATAGAGGGGCTCAAAGAGGAGGGATAAGACTGTTACCTCGCTTAGTTAGAGTGGAGGGTGTCAGGTCTAGGAGAGGGGAAAGCTTATGGCATTACTCTTGAGAGGGTGTGTTGGTGCTTCCACCCATAGTGGTGTGTAACCACCGTAAAGAGACAGGGTTCTCCAAAATCCTCAGGGTTGTTGCTTTCTAACGGTGTCTTTTGAGTCAGTCTGGATAGATGCGGAGGGCGAGCTCTCAGGAACAGGTTTGAAGTGCTAGTACGTGCGTGTCATGCACACCCCAGGGCGTGATAACGTCACCGGGTGGCACAGGGCAGAGAGTGTGTCCCGTTGCTGAGATATCCTCATAATGCATATGGGCATAATATTTATTTCAAAACATGCCTGATCCCCTTGGACTGCGTCCCTAGCATATTGCAATGGGTATGGCTATACCGTGTCACTGAGCAGGGATTTTGCATGAGAGTGGCCAAAGGAATGAAATAAGGCACCAATAGGTGTAGCTGAAAGGAAGAAGGAAACAGGCTGGTAACCCAGATGTCCTAATCCCATGTGTCTGGTCTGTCTTAGTCCTACCCTGGAGGAAAGGGCTGACGAGCAAAAATGTCCTCAGCAGCTTACAAGGAACAGAAAAAATGCCAGAGTGTGGTAGACCTGAGATGGCTGTTTGTGGCTTCCCAGCAAAGTATGAATAATGGAATTCTGTATTGactgttttatatttttcaaTTGACAGAGCTAAGTTGTCATAAGATTTCCCCAAAAATATCCAGAGAAGATATCTGAAGTGAACCCGAGAAGCCTATTTTCCAGTTTATTATATAAAAACAGGAATTGTGTTAGCTTTCTTCCCTGCCTTACACACCTAGAGTGGGAGCCCTGGTTATGACAAATGGCAATCAGTCATCCAGATCCATAAGTCACAAGACCAGAGGGAGAGCGGACATGTTGAGTTTCGTCCTGGCTCAAAACCTGAGAAGGTGCCAAGGGGATAGCTGGAGAGTGGATGGCACTTGGGGTTAAGAGTGCACATCCCCCATTTTGCCATGTGAGCGAAGACCTGAAAAGGCACTGCTACACAGGAAATATTATCCCCCCCCCCAATGCAGATGTGCCTCCCCATTGTTGTCAGGccgagagggggagggatgactTCAGCCACAGCAAAGGACTGTTTAACTACAGGTTTGCTTCTTAgcaggtgctatctagaaccaaaaattgttctttggctgtccccataggagaaccctttgaagaagcccttttggtttcaggtagaacccttttggttcctggtagaccccttttgggttccatgtagaattctttccacagagggttccaaaaagggttctacctggaacaaaaagggttctcctatggggacagccgcagaacctttttttctaagagtgtagtctgCTGAGTCGCCGGGGGTCTTGGGCCCCCAGAGTCAGCTTGTTTCCCCCTCCCTGCTGTGAGGCTAGGGCGAGTTGCAGTGACCAACGGGCTTCGACTTCTTCCTTACACATCACACTTCTGCCTCATGGTGGTGACAGCAGGGCTGAACAACTCTGGGTGTCACAGGGAAATCCAGGAGCTCCATTTTCTCTTTGTCTGTTAAGCTGGACAAGCTTAGCCAAAGTGCCCTTTCATCCACCACCACCAGGCTCATGGTGCGTCCACAGACGGATGGCATTATGGGAGGCCTGGAGATTTAGATCCGTAATCATACAGATCTCATCCCAACCTTCCTGATTCAGGGTCCAGTTGATTCCGTTGCTTCCCCACATCCTCCAGTAGCTATGCCTGGTAATCCAACACGTTTGGTGCTCTGATTGATAAAGCCAAGGCTTTGTACGTCTTATGAAAAATGGAGGCAGAAAAGCGCTTTGTCTTTCCAGGGAGAGAAGTGCCAGAAGTGCTAGCAGCACTGCATGTGGGGTGGTCCGCCAGTGACGGCTCCACCATGAGAGGGTTGCAGCACCCAGATTCTTTCATATTGTGCTTGTCCATACTCAGTAAGCCAGGATATTGCTGGTAAGGGGGCTTATCCCATTAACTCCTAGCCTCTTTGAGACCGTCTGGGCCCGCAAGAAGAAGTTGCTTGGCAGGGGCCATGCGAGATCGCAGTCCTTTCCCATCATATAGGTCCCTTTCGGGGTCCTGGCTCTCCAAAAGAGCTTGCCACACAATATCAAGTCTGCCCGCGGTTCGCGTGCAAATGTTGAGGAGCCCGTACTCCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785993 lncRNA upstream 5427 26242359 ~ 26242656 (+) True G690333
TU785827 lncRNA upstream 98382 26148973 ~ 26149701 (+) True G690188
TU785745 lncRNA upstream 160488 26083741 ~ 26087595 (+) False G690135
TU785966 lncRNA downstream 88 26250617 ~ 26252906 (+) False G690307
TU785965 lncRNA downstream 262 26250791 ~ 26252930 (+) False G690307
TU785967 lncRNA downstream 262 26250791 ~ 26252906 (+) True G690307
TU785969 lncRNA downstream 9052 26259581 ~ 26260475 (+) True G690309
TU785968 lncRNA downstream 24123 26274652 ~ 26277497 (+) True G690308
XM_036985181.1 mRNA upstream 75736 26133197 ~ 26172347 (+) False LOC110529702
XM_021612156.2 mRNA downstream 15730 26266259 ~ 26271258 (+) False LOC110529705
XM_021612157.2 mRNA downstream 15736 26266265 ~ 26271258 (+) True LOC110529705
XM_021612159.2 mRNA downstream 112648 26363177 ~ 26376176 (+) True LOC110529707
XM_021612158.2 mRNA downstream 130568 26381097 ~ 26385684 (+) False LOC110529706
XM_036985187.1 mRNA downstream 130568 26381097 ~ 26389879 (+) False LOC110529706
TU785811 other upstream 52539 26133191 ~ 26195544 (+) True LOC110529702
TU784988 other upstream 566356 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 1186633 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 1263257 24982729 ~ 24984826 (+) True G688613
TU782837 other upstream 2257084 23984445 ~ 23990999 (+) False LOC110529210
TU786082 other downstream 130599 26381128 ~ 26383426 (+) True LOC110529706
TU787679 other downstream 1305755 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 1645172 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 1719947 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 1819371 28069900 ~ 28070228 (+) True G692424

Expression Profile