RNA id: TU785967


Basic Information

Item Value
RNA id TU785967
length 2116
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G690307
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26250617 ~ 26252930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGAGAGTTTTAGCCTCCTTTTCTAACCTGCTCTAGAGAGCAATTTACAATGCTTACACTACTCTGGGTTATCGACTGCTTCCTGAGCAGGTTCTCGTCCCAGACAATTGATGCACAGAGTGTGAAAATCCTTCCCCGCAACCGCGGTGCCGTAATCACAACAACGTGGTGGTTTGGGCGCGAGGCTCATCTAGGGATGTGGCAGCAGTTACCATGGTGGAGAAaactatactgaataaaaatctcAACGCAACATACAACCATGGCACAGCCATGCGTGGGCCTGGAAGGAAAtatgcccacccacttgggaggtaggcccacccactggggaaccaggccagccaatcagaattaattTTTCCCCaccaaagggctttattacagatcaAAATACtgctcagtttcatcagctgtccagttgGCTGGTCTCAGGCGATCCCGTAGTTGAAGAAGCTGGGTGTGGAGGTCCTAGTTTGGCGTGgtaacacgtggtctgcggttgtgaggctggttggacgtactgccaaattctctaaaatgacgttgagatggcttatggtagagaaatgaacattcaattctctggcaacagctctggtggacattcctgcagtctcatgccaattgcacacttcctcaacttgacatctgtgtcattgtgttttGTTGACAGAACTGTGCATTTGAGGGGCCTTTTATTGacaccagcacaaggtgcacctgtgtgatgatcatgctgtttaatcagcttcttgatatgtcacacctgtcaggattatcttggcaaagaagaaataaTGACTAACAGGGAAACAaattaaacaaatttgtgcacaacatttcagAGAGATAcggtttttgtgcgtatggaacatttctgggatcttttatttcagatcatgaaacatgggaccaacactttacatgttgcatttgtttttatactgaataaaaatatgtaTACTTTAGTTAGGCATAAGCTAACTAGTAGAAGCCTTACAGCTAAAGCTAGCTACAACCGTGAAGATAGTGACACGTTAGCAAGCTATCAGCTACCCTTGCTAAGGCGCACTGTAGCTAGCATCGTGTTGGTCGAAGGCTTGTGCTAACCTGGTCAGACGAAGCTTAACGGTGAGGGCAAACCGAACCTCGATAGCTAGCCATGTGGAGCCATGAATTATTTTCAAAGCAAAAACCTTTCTGTCGGTACTCAACTATTGACAGAAGCTGACGTTCTATGTTTCGCAGCATTAACCTCAAGTTTCGTGTGATCAGTTCAGTAGGAAACCAGGAATCTAGTCAACTAGTCAAGCTGAGTAGAGTTTAGTGAACGTATTCTCTAACGCAAGAATGAGAGGTGAGAATTACCAGTTTGGCGGGAGAGTGGCTCCCCTTGTGGAGGAGAGGGGCTCACCTGATTCGCCACTcgacctgtctgtctccaacagacTCTGTTTGATTGGATGCTTTGAGCTAATGGACACACTCAGGCGCATCTCATAGTACGACATTGAAAAGAGTATTTGAAATGTAACTAGGTAATTCCTATAGACATCATTATATATCATAGTCTGAGTTAACCCttgtatttaatttttattttgcaTGGTCTCGATGCACACTCACAGCTTCCACACACTCACGtgcactgacactccaacacacacatactgtaacatTCACTCACATTAACAGTATACTGactctagacacacacacactcacatacaattATAACTGATGCTGTTTCTACCCTGTTTATCATATATTCTGATGCCTTGTCACCTTTCCACTATACATATCTACAGTGCCtaaagaaagtattcacacccctttactttttccagaTTTGTTGTTAcagctgaatttaaaatggattacatttagattttgtgtcactggcctatgtgtcaaagaaattaactatgtcctgaatacaaagtgttatgtttggggcaaatccaacacaacacatcactgagtaccacttttcatattttcaagcatggtggtgtcagtatcatgttatgggtatgcttgtcatcggcaagggctgggcgatatggccaaaatatatcacagtatttatttatttatttatttaagagggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785958 lncRNA upstream 262 26248083 ~ 26250529 (+) True G690304
TU785993 lncRNA upstream 8135 26242359 ~ 26242656 (+) True G690333
TU785827 lncRNA upstream 101090 26148973 ~ 26149701 (+) True G690188
TU785747 lncRNA upstream 163196 26083741 ~ 26087595 (+) False G690135
TU785969 lncRNA downstream 6675 26259581 ~ 26260475 (+) True G690309
TU785968 lncRNA downstream 21746 26274652 ~ 26277497 (+) True G690308
TU786009 lncRNA downstream 72424 26325330 ~ 26348451 (+) True G690348
TU786050 lncRNA downstream 99123 26352029 ~ 26352303 (+) True G690386
TU786058 lncRNA downstream 107779 26360685 ~ 26360884 (+) True G690394
XM_036985181.1 mRNA upstream 78444 26133197 ~ 26172347 (+) False LOC110529702
XM_021612156.2 mRNA downstream 13353 26266259 ~ 26271258 (+) False LOC110529705
XM_021612157.2 mRNA downstream 13359 26266265 ~ 26271258 (+) True LOC110529705
XM_021612159.2 mRNA downstream 110271 26363177 ~ 26376176 (+) True LOC110529707
XM_021612158.2 mRNA downstream 128191 26381097 ~ 26385684 (+) False LOC110529706
XM_036985187.1 mRNA downstream 128191 26381097 ~ 26389879 (+) False LOC110529706
TU785811 other upstream 55247 26133191 ~ 26195544 (+) True LOC110529702
TU784988 other upstream 569064 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 1189341 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 1265965 24982729 ~ 24984826 (+) True G688613
TU782837 other upstream 2259792 23984445 ~ 23990999 (+) False LOC110529210
TU786082 other downstream 128222 26381128 ~ 26383426 (+) True LOC110529706
TU787679 other downstream 1303378 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 1642795 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 1717570 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 1816994 28069900 ~ 28070228 (+) True G692424

Expression Profile