RNA id: TU786418


Basic Information

Item Value
RNA id TU786418
length 278
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G690705
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26264914 ~ 26326435 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccaaaactgccataaaatcGCCCGACTATgctttgtaactgcacatggggacaaagatcgtaccttttggagaaatgtcctctggtctgatgaaacaaaaattttggccataatgaccatcgttatgtttggaggaaaaaggggaaggcttgcaagccgaagaacaccttcccaatcgtgaggcacgggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatggcatcgtgagAATGGAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU786412 lncRNA downstream 8293 26256081 ~ 26256621 (-) True G690700
TU786411 lncRNA downstream 10928 26253744 ~ 26253986 (-) True G690699
TU786410 lncRNA downstream 11519 26253161 ~ 26253395 (-) True G690698
TU786403 lncRNA downstream 14173 26246357 ~ 26250741 (-) False G690696
TU786406 lncRNA downstream 16956 26246357 ~ 26247958 (-) True G690696
TU786499 lncRNA upstream 25979 26352414 ~ 26352739 (-) True G690776
TU786503 lncRNA upstream 29887 26356322 ~ 26356552 (-) True G690780
TU786506 lncRNA upstream 34592 26361027 ~ 26361315 (-) True G690783
TU786532 lncRNA upstream 58148 26384583 ~ 26385726 (-) True G690801
TU786475 lncRNA upstream 102267 26428702 ~ 26430843 (-) False cenpw
XM_021612155.2 mRNA downstream 89275 26172446 ~ 26175639 (-) True LOC110529703
XM_036986843.1 mRNA downstream 142634 26120465 ~ 26122280 (-) True LOC110531082
XM_021612146.2 mRNA downstream 158113 26094941 ~ 26106801 (-) True LOC110529700
XM_036985177.1 mRNA downstream 170305 26087446 ~ 26094609 (-) True LOC110529220
LOC110529219 mRNA downstream 247132 26006882 ~ 26017782 (-) True LOC110529219
XM_021612161.2 mRNA upstream 96060 26422495 ~ 26426074 (-) True LOC110529708
XM_021612162.2 mRNA upstream 102605 26429040 ~ 26430888 (-) False cenpw
XM_021612163.2 mRNA upstream 117682 26444117 ~ 26463156 (-) False LOC110529710
XM_021612164.2 mRNA upstream 117682 26444117 ~ 26463156 (-) False LOC110529710
XM_021612167.2 mRNA upstream 117682 26444117 ~ 26463156 (-) False LOC110529710
TU785681 other downstream 273771 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 299421 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 459439 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 459439 25802030 ~ 25805475 (-) True LOC110529694
TU785403 other downstream 600249 25664165 ~ 25664665 (-) True G689810
TU786474 other upstream 102680 26429115 ~ 26430843 (-) True cenpw
TU787231 other upstream 537775 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 989133 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 1789301 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 2152382 28478817 ~ 28481898 (-) True si:dkey-85n7.8

Expression Profile