RNA id: TU786117



Basic Information


Item Value
RNA id TU786117
length 238
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G690442
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26462655 ~ 26462892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCGTGTTTCTAGCTACATCCTTTGCTTTGGCTGCTTCGCTTGTTTCTGGTGCAGCAATACCGAGATTTCCCGATAATTATGTAACCTTATGCAACCGGAGTCTACTGACTGGATGGATGCTGCGTGAaactgtggagaggggacactttTAGCTACGCAGAAGGGACAAGGTCCACACACAACTGACAGCTGAGCTGATGCTGGCTCAGCACGTTAACGGTGGCCTAGCTTCGTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU786119 lncRNA upstream 2523 26452388 ~ 26460132 (+) False G690443
TU786118 lncRNA upstream 2523 26458333 ~ 26460132 (+) True G690443
TU786120 lncRNA upstream 3925 26452388 ~ 26458730 (+) False G690443
TU786121 lncRNA upstream 9220 26452388 ~ 26453435 (+) False G690443
TU786114 lncRNA upstream 12922 26449424 ~ 26449733 (+) True G690439
TU786215 lncRNA downstream 132171 26595063 ~ 26650001 (+) True G690530
TU786293 lncRNA downstream 226752 26689644 ~ 26689879 (+) True G690606
TU786306 lncRNA downstream 238884 26701776 ~ 26702014 (+) True G690619
TU786314 lncRNA downstream 247318 26710210 ~ 26710417 (+) True G690627
TU786226 lncRNA downstream 289072 26751964 ~ 26758023 (+) True ppm1ab
XM_036985188.1 mRNA upstream 69108 26386200 ~ 26393547 (+) False LOC110529706
XM_036985189.1 mRNA upstream 69108 26386200 ~ 26393547 (+) False LOC110529706
XM_036985190.1 mRNA upstream 69108 26386202 ~ 26393547 (+) False LOC110529706
XM_036985187.1 mRNA upstream 72776 26381097 ~ 26389879 (+) False LOC110529706
XM_036985191.1 mRNA downstream 3286 26466178 ~ 26588364 (+) False LOC110529712
XM_021612170.2 mRNA downstream 3288 26466180 ~ 26590958 (+) False LOC110529712
XM_021612169.2 mRNA downstream 39603 26502495 ~ 26588364 (+) True LOC110529712
XM_021612176.2 mRNA downstream 150716 26613608 ~ 26734774 (+) True kcnh5a
XM_021612178.2 mRNA downstream 284232 26747124 ~ 26756366 (+) False ppm1ab
TU786082 other upstream 79229 26381128 ~ 26383426 (+) True LOC110529706
TU785811 other upstream 267111 26133191 ~ 26195544 (+) True LOC110529702
TU784988 other upstream 780928 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 1401205 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 1477829 24982729 ~ 24984826 (+) True G688613
TU787679 other downstream 1093392 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 1432809 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 1507584 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 1607008 28069900 ~ 28070228 (+) True G692424
TU789022 other downstream 2032393 28495285 ~ 28558373 (+) True btbd7

Expression Profile