RNA id: TCONS_00036833


Basic Information

Item Value
RNA id TCONS_00036833
length 769
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_018056
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23081271 ~ 23083464 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGTCACACGTGTTCTTTCTTTTCCGTTTGCACAATCCCTGAGAGCAGGCACAGAAAACATGAGCGGAGGCAAAATTACCTCTGACTGGCCATCTGAGCCCCCTGACTGAAGAGGAAATCACCAATTACTACAATGTCTGAAATATAAAGGCTTAAAGATGGTCTTGTTCCAGAGCCCACAGTTGTTGATGAATCCTTCCACAGTTACTTGGTGAGTGTGGTGCCTCTCAGCCCCTCAGCTCTGTTTTGTCAGCCCCTTTTATTGCACATTCAAGTCCTTCTATGGCTTGAGTGAATAACACAGGGGGGCAGAAGAATTCTCTCAAAAACCTGAAGTGCTGGCTTTGATATTCCATGCTTCGGATCCTGTCGGGAGAAACAACTTTTCAACAATTATATTCATTACTTCTGTTTAAAAAGATCAATATTTAGTCTGTTTTCTTTTGTTTGCAGGAGGTAAAGGCTAGGAAGAGAAATCTGCAATCATTCGGTCACAATGGCTGCGTTTCTGGGCCTTGTGTTCGGTGATCTGGTGGCTTACCTGTACCTGTGATGGAGAATGAATTTTTCTATTTGGAAAAGTTCAGGCAGAATCTGTCTCTAGGTGGAAGCTTAATGAATATTAATCACTCAATGAGTGCTTGACAATGTAGAATAAGTCAACTCTATACAGTTGTGTTGGTGGTTTgtctaaataaacaatatttatctATTATAAGTGAGcttgtctattttttattttttaacttttgaaTAGTCAACATTAAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036827 lncRNA downstream 421871 22651976 ~ 22659422 (-) False XLOC_018051
TCONS_00036828 lncRNA downstream 421912 22652821 ~ 22659381 (-) True XLOC_018051
TCONS_00036466 lncRNA downstream 428337 22652248 ~ 22652956 (-) False XLOC_018051
TCONS_00036464 lncRNA downstream 648797 22389116 ~ 22432496 (-) False XLOC_018048
TCONS_00036465 lncRNA downstream 648798 22432112 ~ 22432495 (-) True XLOC_018048
TCONS_00036834 lncRNA upstream 73789 23157083 ~ 23159498 (-) True XLOC_018058
TCONS_00035584 lncRNA upstream 77382 23160676 ~ 23163574 (-) False XLOC_018059
TCONS_00035585 lncRNA upstream 77382 23160676 ~ 23163578 (-) False XLOC_018059
TCONS_00036835 lncRNA upstream 77382 23160676 ~ 23168968 (-) False XLOC_018059
TCONS_00035587 lncRNA upstream 78144 23161438 ~ 23163413 (-) False XLOC_018059
TCONS_00035578 mRNA downstream 40018 22869608 ~ 23041275 (-) True XLOC_018053
TCONS_00035580 mRNA downstream 55070 23022985 ~ 23026223 (-) True XLOC_018055
TCONS_00035576 mRNA downstream 282499 22739792 ~ 22798794 (-) False XLOC_018052
TCONS_00035577 mRNA downstream 302899 22756556 ~ 22778394 (-) True XLOC_018052
TCONS_00035575 mRNA downstream 596672 22483048 ~ 22484621 (-) True XLOC_018050
TCONS_00035583 mRNA upstream 77218 23160512 ~ 23171430 (-) False XLOC_018059
TCONS_00035588 mRNA upstream 120652 23203946 ~ 23226453 (-) False XLOC_018061
TCONS_00035589 mRNA upstream 122840 23206134 ~ 23219964 (-) False XLOC_018061
TCONS_00035591 mRNA upstream 162326 23245620 ~ 23253630 (-) False XLOC_018062
TCONS_00035592 mRNA upstream 162326 23245620 ~ 23254876 (-) False XLOC_018062
TCONS_00035579 other downstream 170981 22910198 ~ 22910312 (-) True XLOC_018054
TCONS_00035566 other downstream 1171159 21897971 ~ 21910134 (-) True XLOC_018042
TCONS_00035565 other downstream 1218389 21839504 ~ 21862904 (-) False XLOC_018042
TCONS_00035557 other downstream 1749165 21332014 ~ 21332128 (-) True XLOC_018040
TCONS_00035546 other downstream 2259512 20817235 ~ 20821781 (-) False XLOC_018037
TCONS_00035586 other upstream 77985 23161279 ~ 23163257 (-) False XLOC_018059
TCONS_00035590 other upstream 140606 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035593 other upstream 162345 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035595 other upstream 340552 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035611 other upstream 999845 24083139 ~ 24122757 (-) True XLOC_018072

Expression Profile

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