RNA id: TU788176


Basic Information

Item Value
RNA id TU788176
length 287
RNA type TUCP
GC content 0.64
exon number 1
gene id G692343
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 27895701 ~ 27895987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAATGCACTCATGGATGGACTCACTGAGCCCCAGGCTAGCCGCGCTAGGCAAGGGACCCAGGATGGAAGCTAGGGAGGGCCCTCCTCTGGGTGGTGGATGTGGAGGGGGTGCCTCCTCTGTCActccttcttcccctctttcGTCCCCTTGCTGTTCCCCCTGGATGACCTGGCAGAGGAAGTCCTGGTTCAGGTGTTGGGCGACTGCCTCCAGCTCCTCGTCCTCCTCGGGGTCCACCTCCCTGGGGCTGGAGCACGAGGCCTGAGAAAGCACCTCGTCCAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU788174 lncRNA upstream 6857 27888526 ~ 27888844 (+) True G692341
TU788149 lncRNA upstream 18515 27876983 ~ 27877186 (+) True G692326
TU788147 lncRNA upstream 22446 27872961 ~ 27873255 (+) True G692324
TU788145 lncRNA upstream 24609 27870841 ~ 27871092 (+) True G692322
TU788140 lncRNA upstream 28455 27866444 ~ 27867246 (+) True G692317
TU788178 lncRNA downstream 909 27896896 ~ 27897345 (+) True G692345
TU788179 lncRNA downstream 1398 27897385 ~ 27897635 (+) True G692346
TU788180 lncRNA downstream 1866 27897853 ~ 27898074 (+) True G692347
TU788182 lncRNA downstream 5499 27901486 ~ 27901686 (+) True G692349
TU788192 lncRNA downstream 24036 27920023 ~ 27920427 (+) True G692359
XM_021612192.2 mRNA upstream 293537 27498161 ~ 27602164 (+) False jag2b
XM_021612194.2 mRNA upstream 293537 27498161 ~ 27602164 (+) False jag2b
XM_036985210.1 mRNA upstream 412014 27391717 ~ 27483687 (+) True nudt14
XM_036985207.1 mRNA upstream 651523 27011159 ~ 27244178 (+) False LOC110529722
XM_036985218.1 mRNA downstream 13718 27909705 ~ 27914563 (+) False btbd6b
XM_036985216.1 mRNA downstream 13944 27909931 ~ 27914563 (+) False btbd6b
XM_036985217.1 mRNA downstream 13944 27909931 ~ 27914563 (+) True btbd6b
XM_036985211.1 mRNA downstream 35514 27931501 ~ 27948051 (+) False LOC110529728
XM_036985212.1 mRNA downstream 35518 27931505 ~ 27942656 (+) False LOC110529728
TU787679 other upstream 338682 27556284 ~ 27557019 (+) True jag2b
TU786082 other upstream 1512275 26381128 ~ 26383426 (+) True LOC110529706
TU785811 other upstream 1700157 26133191 ~ 26195544 (+) True LOC110529702
TU784988 other upstream 2213974 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 2834251 25058953 ~ 25061450 (+) True G688823
TU788158 other downstream 74489 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 173913 28069900 ~ 28070228 (+) True G692424
TU789022 other downstream 599298 28495285 ~ 28558373 (+) True btbd7
TU789102 other downstream 808863 28704850 ~ 28705752 (+) True G693207
TU789468 other downstream 1034773 28930760 ~ 28938273 (+) False cdca4

Expression Profile