RNA id: TU788196


Basic Information

Item Value
RNA id TU788196
length 201
lncRNA type intronic
GC content 0.47
exon number 1
gene id G692363
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 27924296 ~ 27924496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTCtcccaggcagagagagagacagacagctgtgtaCTTACCAGAGAGAAGCCATCTGCAGCACagcctcacacacgcacacacgtatgcttgcaaacacatacacactcacagacacacacagacacacacacaaataagcaAAATCCATGAACACACAGATGGTAATAcagaacacacatactgtatacagcaACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU788194 lncRNA upstream 1894 27922055 ~ 27922402 (+) True G692361
TU788192 lncRNA upstream 3869 27920023 ~ 27920427 (+) True G692359
TU788182 lncRNA upstream 22610 27901486 ~ 27901686 (+) True G692349
TU788180 lncRNA upstream 26222 27897853 ~ 27898074 (+) True G692347
TU788179 lncRNA upstream 26661 27897385 ~ 27897635 (+) True G692346
TU788197 lncRNA downstream 290 27924786 ~ 27925014 (+) True G692364
TU788200 lncRNA downstream 4770 27929266 ~ 27929472 (+) True G692367
TU788207 lncRNA downstream 16924 27941420 ~ 27941655 (+) True LOC110529728
TU788166 lncRNA downstream 48029 27972525 ~ 27973844 (+) True G692333
TU788217 lncRNA downstream 73560 27998056 ~ 28068929 (+) True G692381
XM_036985218.1 mRNA upstream 9733 27909705 ~ 27914563 (+) False btbd6b
XM_036985216.1 mRNA upstream 9733 27909931 ~ 27914563 (+) False btbd6b
XM_036985217.1 mRNA upstream 9733 27909931 ~ 27914563 (+) True btbd6b
XM_021612192.2 mRNA upstream 322132 27498161 ~ 27602164 (+) False jag2b
XM_036985211.1 mRNA downstream 7005 27931501 ~ 27948051 (+) False LOC110529728
XM_036985212.1 mRNA downstream 7009 27931505 ~ 27942656 (+) False LOC110529728
XM_021612196.2 mRNA downstream 7010 27931506 ~ 27941756 (+) False LOC110529728
XM_036985220.1 mRNA downstream 27139 27951635 ~ 27970830 (+) False xrcc3
XM_036985219.1 mRNA downstream 27182 27951678 ~ 27970830 (+) False xrcc3
TU788176 other upstream 28309 27895701 ~ 27895987 (+) True G692343
TU787679 other upstream 367277 27556284 ~ 27557019 (+) True jag2b
TU786082 other upstream 1540870 26381128 ~ 26383426 (+) True LOC110529706
TU785811 other upstream 1728752 26133191 ~ 26195544 (+) True LOC110529702
TU784988 other upstream 2242569 25678652 ~ 25681727 (+) False LOC110529690
TU788158 other downstream 45980 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 145404 28069900 ~ 28070228 (+) True G692424
TU789022 other downstream 570789 28495285 ~ 28558373 (+) True btbd7
TU789102 other downstream 780354 28704850 ~ 28705752 (+) True G693207
TU789468 other downstream 1006264 28930760 ~ 28938273 (+) False cdca4

Expression Profile