RNA id: TU788302


Basic Information

Item Value
RNA id TU788302
length 407
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G692465
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28123528 ~ 28123934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATTTCGGTTTTACAACAGTACAGTGGTTAATATGAATATTATGTTTTAGAGTAGAACAGATTAATTGGCCCACCCGAACTTTTGGCACTACCCGTCGGAAGGTCTCTGCTGGATTTTGACGCACCAGGTTTGGCAGGTTGATGATTACACTGGCTCTCTGGACATCCTGACCTGAGCTGGAGAAAGACAACCAAAGAACAGAGCACAGCTATAGCAAGCATGTTACATTTATTGTAAGAATTGGGGGTGAATGcaaccatacagtacacaaacagtGTTCATCAATTAATACTTtgctaacacacatacacacacactgacacatacatACACCCACCATATACGATGCTGATActttttactcttattattatctatcctgatgcctagacACTTATCCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU788301 lncRNA upstream 123 28122577 ~ 28123405 (+) True G692464
TU788259 lncRNA upstream 54234 28069008 ~ 28069294 (+) True G692422
TU788217 lncRNA upstream 54599 27998056 ~ 28068929 (+) True G692381
TU788166 lncRNA upstream 149684 27972525 ~ 27973844 (+) True G692333
TU788207 lncRNA upstream 181873 27941420 ~ 27941655 (+) True LOC110529728
TU788320 lncRNA downstream 26905 28150839 ~ 28151041 (+) True G692480
TU788326 lncRNA downstream 32033 28155967 ~ 28156190 (+) True G692486
TU788408 lncRNA downstream 158464 28282398 ~ 28283080 (+) False LOC110529737
TU788409 lncRNA downstream 158464 28282398 ~ 28295030 (+) True LOC110529737
TU788466 lncRNA downstream 222846 28346780 ~ 28347075 (+) True G692608
XM_021612203.2 mRNA upstream 73094 28032401 ~ 28050434 (+) True serpina10a
XM_036985221.1 mRNA upstream 122622 27976743 ~ 28000906 (+) False LOC110529731
XM_036985222.1 mRNA upstream 122622 27976743 ~ 28000906 (+) False LOC110529731
XM_036985223.1 mRNA upstream 122622 27976743 ~ 28000906 (+) True LOC110529731
XM_036985219.1 mRNA upstream 152698 27951678 ~ 27970830 (+) False xrcc3
XM_021612204.2 mRNA downstream 92266 28216200 ~ 28224790 (+) False asb2a.2
XM_021612205.2 mRNA downstream 92339 28216273 ~ 28224790 (+) True asb2a.2
XM_021612208.2 mRNA downstream 112719 28236653 ~ 28266785 (+) False LOC110529736
XM_036985230.1 mRNA downstream 113343 28237277 ~ 28265874 (+) False LOC110529736
XM_021612207.2 mRNA downstream 113353 28237287 ~ 28266785 (+) False LOC110529736
TU788261 other upstream 53300 28069900 ~ 28070228 (+) True G692424
TU788158 other upstream 151512 27970476 ~ 27972016 (+) True xrcc3
TU788176 other upstream 227541 27895701 ~ 27895987 (+) True G692343
TU787679 other upstream 566509 27556284 ~ 27557019 (+) True jag2b
TU786082 other upstream 1740102 26381128 ~ 26383426 (+) True LOC110529706
TU789022 other downstream 371351 28495285 ~ 28558373 (+) True btbd7
TU789102 other downstream 580916 28704850 ~ 28705752 (+) True G693207
TU789468 other downstream 806826 28930760 ~ 28938273 (+) False cdca4
TU789469 other downstream 811555 28935489 ~ 28938273 (+) True cdca4
TU790056 other downstream 1667063 29790997 ~ 29792747 (+) True G694036

Expression Profile