RNA id: TCONS_00002802


Basic Information

Item Value
RNA id TCONS_00002802
length 608
lncRNA type sense_over
GC content 0.51
exon number 5
gene id XLOC_000015
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 227241 ~ 243798 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGCTCAGTTTGACTGAGTGCGGAGCTGCTGAAGTGGCTCATCCTGACGAGAAAAGCTCCTCGATCCTCCCGGAAAACATCACCTGTGGACGGGAAGATGAAGCGGTTGTAAGCTCGAGCTCTCGctgaaCTGCAGTCTGACCGGTGGTGGACTCTCGCTCAGCTCATCTGCtccatcttcatcatcttcatcatggCGAAAGATGCTGGACTCAAGGAAACGAATGGAGAGATTAAGCTGTTTATCAACCAGAGTCCTGGAAAAGcTGCAGGTGTGCTTCAGCTGCTGACTGTTCATCCAGCGTCCATCACTACAGTCAAGCAGATTCTGCCTAAAACTCTGACGGTCACTGGAGCTCATGTGCTGCCACACATGGTGGTCAGCACCCCTCAGAGGCCCACCATCCCCGTCCTGTTGACCAGTCCACACACACCTACAGCACAGACGCAGCAGGAGTCCTCGCCCTGGTCCAGCGGGTCCGTCAGCACTGACACTCTCCTCTTCTAACACTCATCATCATCAAATAACATTAGAtattactgttgatcatcagttacagTGCAAACAGAGCGCTTAGTTTCTGCCTTTATATcaagtattgtgtgt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002801 lncRNA upstream 4449 221385 ~ 222804 (+) True XLOC_000014
TCONS_00003002 lncRNA upstream 69971 156792 ~ 157282 (+) True XLOC_000011
TCONS_00000021 lncRNA upstream 94038 127266 ~ 133215 (+) False XLOC_000008
TCONS_00000023 lncRNA upstream 96032 130627 ~ 131221 (+) True XLOC_000008
TCONS_00000022 lncRNA upstream 97662 127300 ~ 129591 (+) False XLOC_000008
TCONS_00002803 lncRNA downstream 867 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002804 lncRNA downstream 1858 237391 ~ 241707 (+) True XLOC_000015
TCONS_00003003 lncRNA downstream 119948 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA downstream 120238 355771 ~ 358562 (+) True XLOC_000018
TCONS_00000055 lncRNA downstream 345155 580688 ~ 586501 (+) True XLOC_000023
TCONS_00000030 mRNA upstream 2116 218524 ~ 225137 (+) False XLOC_000014
TCONS_00000028 mRNA upstream 44995 176583 ~ 182258 (+) False XLOC_000013
TCONS_00000029 mRNA upstream 44995 176586 ~ 182258 (+) True XLOC_000013
TCONS_00000027 mRNA upstream 59855 158034 ~ 167398 (+) True XLOC_000012
TCONS_00000026 mRNA upstream 69117 157793 ~ 158136 (+) False XLOC_000012
TCONS_00000033 mRNA downstream 9543 245076 ~ 258138 (+) True XLOC_000016
TCONS_00000034 mRNA downstream 24506 260039 ~ 296055 (+) False XLOC_000017
TCONS_00000035 mRNA downstream 24506 260039 ~ 296057 (+) False XLOC_000017
TCONS_00000037 mRNA downstream 31502 267035 ~ 269883 (+) False XLOC_000017
TCONS_00000038 mRNA downstream 42198 277731 ~ 280259 (+) False XLOC_000017
TCONS_00000003 other upstream 213996 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 24507 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 278480 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 302056 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 340911 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 983158 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

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