RNA id: TU790540


Basic Information

Item Value
RNA id TU790540
length 357
lncRNA type intronic
GC content 0.37
exon number 3
gene id G694483
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29509040 ~ 29527264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagataatagaatgaggatatagagtgaggatgtagaggatatagagagagagaatagagagaggatatagagtgaggatatagagagaggatatagagaatgagaatagagagaggatatagagtgaggatatagagagagattatagagcgaagatatagagagagaaaatggagagaggatatagagagagaaaatagagagaggatatagagagagtgaatagagagaggatatagagagaggatatagagagaggctatagagagaggatatagagtgaggatatagagagagataatagtgagaggatatagagtgaggatatagagtgaggataaagagagaggatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790532 lncRNA downstream 15086 29491333 ~ 29493954 (-) True G694476
TU790005 lncRNA downstream 172626 29336160 ~ 29336414 (-) True G694028
TU789983 lncRNA downstream 189922 29318884 ~ 29319118 (-) True G694006
TU789975 lncRNA downstream 200328 29308492 ~ 29308712 (-) True G693998
TU789954 lncRNA downstream 220935 29287882 ~ 29288105 (-) True G693977
TU790546 lncRNA upstream 1769 29529033 ~ 29532973 (-) False G694487
TU790547 lncRNA upstream 1769 29529033 ~ 29530155 (-) True G694487
TU790549 lncRNA upstream 2965 29530229 ~ 29533751 (-) True G694488
TU790702 lncRNA upstream 256214 29783478 ~ 29784913 (-) True G694631
TU790751 lncRNA upstream 361042 29888306 ~ 29888581 (-) True G694673
XM_021612264.2 mRNA downstream 43596 29460990 ~ 29465444 (-) False LOC110529760
XM_021612266.2 mRNA downstream 43596 29460990 ~ 29465444 (-) True LOC110529760
XM_036986866.1 mRNA downstream 285276 29213787 ~ 29223764 (-) True LOC118965624
XM_036986844.1 mRNA downstream 295461 29212152 ~ 29213579 (-) True LOC118965608
XM_036986865.1 mRNA downstream 300112 29204150 ~ 29208928 (-) True LOC118965623
XM_021612267.2 mRNA upstream 363291 29890555 ~ 29938325 (-) False LOC110529761
XM_021612268.2 mRNA upstream 363291 29890555 ~ 29938325 (-) False LOC110529761
XM_021612269.2 mRNA upstream 363291 29890555 ~ 29938331 (-) False LOC110529761
XM_036985249.1 mRNA upstream 445247 29972511 ~ 29985022 (-) False gtf2a1
XM_036985246.1 mRNA upstream 445247 29972511 ~ 29986359 (-) False gtf2a1
TU789639 other downstream 550208 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 914609 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1027142 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 1392992 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 2193105 27315568 ~ 27315935 (-) True G691747
TU790962 other upstream 474499 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 511324 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 1319638 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 1327843 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1950090 31477354 ~ 31478027 (-) True G696499

Expression Profile