RNA id: TU790546


Basic Information

Item Value
RNA id TU790546
length 1592
lncRNA type intronic
GC content 0.37
exon number 2
gene id G694487
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29529033 ~ 29532973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAgtgaggatacagagagaggatttagaatgaggatatagagagaggatatagagagagaaaatagagacagGATATAGAGACAGGATATAGAAAGATGATATagatagaggatatagagagaggatatagagagaggacatagagagaggatatagagtgaggatatagagagagatagagagaggatatagagagaggatacagagagaggatatagagagaggatatagaaagaggatatagagagaggatatagagagaggattcagagagaggatatagagtgaggatatagagagaggatatagagagagataatagagagaggatatagagtgaggatatagagagaggatatagagatatTATagtgagaggatatagagtggagatatagagagaggatacagagagaggatatagagtgaggatatagaaagaggatatagagagaggacatagagagagataatagagagaggatatggtgtgaggatatagagagaggatatagagagaggatacagagagaggatatagagagaggatatagaaagaggatatagagagaggatatagagagaggattcagagagaggatatagagtgaggatatagagagaggatatagagagagataatagagagaggatatagagtgaggatatagagagaggatatagagagagattatagtgagaggatatagagtggagatatagagagaggatacagagagaggatatagagtgaggatatagaaagaggatatagagagaggacatagagagagataatagagagaggatatagagtgaggatatagagagaggatatagagagagataatagagagaggatatagagtgaggatatagagagaggatatagagagagattatagtgagaggatatagagaggagatatagagagaggattcagagagaggatatagagtgaggatatagagagagataatagagagaggatatagagtgaggatatagagagaggatatagagagagataatagtgagaggatatagagtggagatatagagagaggatacagagagaggatatagagtgaggatatagaaataggatatagagagagaaaatagagagaggatatagagagaggatacagagagaggatatagagtgaggatatagagagaggatatagagagagaaaatgaaaagaGGATATAGAGTCAGTATATagtgagaggatatagagagagcaTATATAGTGAGAATaaatagaggatatagagagagaaatTAGAGAGAGGATTTatagtgaggatatagagagaggatacatagagagaaaatagagagaggatatagagagagaaaatagagagaggatatcaagagaggatatagagagaggctaTAGAgtgagggtatagagagaggatatagagagagtatatcaagagaggatatagagagaagaTATAGATTGaggatatagagatatagagagagaaaatagagagaggatatagagagagaaaatagagagaggatatagagacaGAAAATggagtgaggatatagagtggggatacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790540 lncRNA downstream 1769 29509040 ~ 29527264 (-) True G694483
TU790535 lncRNA downstream 19018 29495015 ~ 29510015 (-) True G694478
TU790532 lncRNA downstream 35079 29491333 ~ 29493954 (-) True G694476
TU790005 lncRNA downstream 192619 29336160 ~ 29336414 (-) True G694028
TU789983 lncRNA downstream 209915 29318884 ~ 29319118 (-) True G694006
TU790702 lncRNA upstream 250505 29783478 ~ 29784913 (-) True G694631
TU790751 lncRNA upstream 355333 29888306 ~ 29888581 (-) True G694673
TU790753 lncRNA upstream 357689 29890662 ~ 29894773 (-) True LOC110529761
TU790776 lncRNA upstream 388155 29921128 ~ 29921453 (-) True G694697
TU790785 lncRNA upstream 398027 29931000 ~ 29931385 (-) True G694705
XM_021612264.2 mRNA downstream 63589 29460990 ~ 29465444 (-) False LOC110529760
XM_021612266.2 mRNA downstream 63589 29460990 ~ 29465444 (-) True LOC110529760
XM_036986866.1 mRNA downstream 305269 29213787 ~ 29223764 (-) True LOC118965624
XM_036986844.1 mRNA downstream 315454 29212152 ~ 29213579 (-) True LOC118965608
XM_036986865.1 mRNA downstream 320105 29204150 ~ 29208928 (-) True LOC118965623
XM_021612267.2 mRNA upstream 357582 29890555 ~ 29938325 (-) False LOC110529761
XM_021612268.2 mRNA upstream 357582 29890555 ~ 29938325 (-) False LOC110529761
XM_021612269.2 mRNA upstream 357582 29890555 ~ 29938331 (-) False LOC110529761
XM_036985249.1 mRNA upstream 439538 29972511 ~ 29985022 (-) False gtf2a1
XM_036985246.1 mRNA upstream 439538 29972511 ~ 29986359 (-) False gtf2a1
TU789639 other downstream 570201 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 934602 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1047135 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 1412985 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 2213098 27315568 ~ 27315935 (-) True G691747
TU790962 other upstream 468790 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 505615 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 1313929 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 1322134 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1944381 31477354 ~ 31478027 (-) True G696499

Expression Profile