RNA id: TU790702


Basic Information

Item Value
RNA id TU790702
length 823
lncRNA type intronic
GC content 0.40
exon number 2
gene id G694631
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29783478 ~ 29784913 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacacacacaggctttcaCCGTTATGCATTCGGAGTACGAGGGAGGCAGTCGATAAGGGTGCACCCTAACCTGTAATTACTCGAGAAATGACAATGCCTTTACAAGTGAGGGGGCAAAAAAAATCAATCATTGTTGAATTACTATCACCGAGTGTCCTGCAAATTACAAGCGGGAGAAGGAAAATACATGACCACATATTCGATCTCTTACCTGGACAAAGGAATGCACACTGAATAGAAAATAACTTGATTCTATCACTTGGAAGAATTCATAGATTAAATTAGAAAAGTCTCTCTGTTTTGTAACTATGTTCAAAcataaaaagtatttaatcaagCATTTAACAACTTTTCTGGTTAGCCTTGATCAAAGGCATTGACTGCATGGGAACTAGCTCTTTAGGAAGGGTGAGAGAACACTGCTACAAACTGCAGCTGGTATTGATAATGCTGTGCCTGTTATACGGGTCTATTGGGTCAGATGTCATTAAGAGGTACTGGGAAGGAAAAcaaagagaggacaagagaggacacTTGTTCTACAAGTACAAGTCCTCAACGTGCAAGTTACTAAAGCCGAATTCTGCACGAAAACGCCAAAAACTCTGTCCCATTTGATAAAACGTGCGAGGCAAGATAGATAAAGGTGCAGTCTCTGCATCACACAACATTtaattcactgtgttggtgtggaACACGGATTGGTAGAATTGAACGCATCCTTGCCTCTGGTGGTAGGAAAGAAAAagaggaaagaaagaaggagggaaagaaagaaagaaagaaagaaggagggaaataaagaaagaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790549 lncRNA downstream 249727 29530229 ~ 29533751 (-) True G694488
TU790546 lncRNA downstream 250505 29529033 ~ 29532973 (-) False G694487
TU790547 lncRNA downstream 253323 29529033 ~ 29530155 (-) True G694487
TU790540 lncRNA downstream 256214 29509040 ~ 29527264 (-) True G694483
TU790535 lncRNA downstream 273463 29495015 ~ 29510015 (-) True G694478
TU790751 lncRNA upstream 103393 29888306 ~ 29888581 (-) True G694673
TU790753 lncRNA upstream 105749 29890662 ~ 29894773 (-) True LOC110529761
TU790776 lncRNA upstream 136215 29921128 ~ 29921453 (-) True G694697
TU790785 lncRNA upstream 146087 29931000 ~ 29931385 (-) True G694705
TU790786 lncRNA upstream 146898 29931811 ~ 29932043 (-) True G694706
XM_021612264.2 mRNA downstream 318034 29460990 ~ 29465444 (-) False LOC110529760
XM_021612266.2 mRNA downstream 318034 29460990 ~ 29465444 (-) True LOC110529760
XM_036986866.1 mRNA downstream 559714 29213787 ~ 29223764 (-) True LOC118965624
XM_036986844.1 mRNA downstream 569899 29212152 ~ 29213579 (-) True LOC118965608
XM_036986865.1 mRNA downstream 574550 29204150 ~ 29208928 (-) True LOC118965623
XM_021612267.2 mRNA upstream 105642 29890555 ~ 29938325 (-) False LOC110529761
XM_021612268.2 mRNA upstream 105642 29890555 ~ 29938325 (-) False LOC110529761
XM_021612269.2 mRNA upstream 105642 29890555 ~ 29938331 (-) False LOC110529761
XM_036985249.1 mRNA upstream 187598 29972511 ~ 29985022 (-) False gtf2a1
XM_036985246.1 mRNA upstream 187598 29972511 ~ 29986359 (-) False gtf2a1
TU789639 other downstream 824646 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1189047 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1301580 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 1667430 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 2467543 27315568 ~ 27315935 (-) True G691747
TU790962 other upstream 216850 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 253675 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 1061989 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 1070194 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1692441 31477354 ~ 31478027 (-) True G696499

Expression Profile