RNA id: TU790425


Basic Information

Item Value
RNA id TU790425
length 220
lncRNA type intronic
GC content 0.48
exon number 1
gene id G694378
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29928151 ~ 29928370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCGGtgaagttgccgtaccaggctgtgatacagcccaacaggatgctctcaattgtgcatctgtaaaagtttgtcagggttttgggtgacaagccaattttcttcagcctcctgaggttgaagagatgctgttgcgccttcttcaccacactgtctgtgtgagtagaccatttcagtttgtctatgATGTGTCCGcctaggaacttaaaactttccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790420 lncRNA upstream 6190 29921666 ~ 29921961 (+) True G694373
TU790389 lncRNA upstream 45831 29882087 ~ 29882320 (+) True G694342
TU790388 lncRNA upstream 46085 29881702 ~ 29882066 (+) True G694341
TU790386 lncRNA upstream 49434 29878465 ~ 29878717 (+) True G694339
TU790380 lncRNA upstream 56266 29871662 ~ 29871885 (+) True G694333
TU790427 lncRNA downstream 1348 29929718 ~ 29929953 (+) True G694380
TU790429 lncRNA downstream 4301 29932671 ~ 29932985 (+) True G694382
TU790814 lncRNA downstream 46839 29975209 ~ 29977194 (+) True G694731
TU790812 lncRNA downstream 55867 29984237 ~ 29986319 (+) True G694730
TU790875 lncRNA downstream 171821 30100191 ~ 30100499 (+) True G694790
XM_021612249.2 mRNA upstream 60576 29340915 ~ 29867575 (+) False LOC110529758
XM_021612271.2 mRNA downstream 10739 29939109 ~ 29970121 (+) True LOC110529762
XM_021612277.2 mRNA downstream 221618 30149988 ~ 30158324 (+) False LOC110529765
LOC110529766 mRNA downstream 239751 30168121 ~ 30173329 (+) True LOC110529766
XM_036985253.1 mRNA downstream 247369 30175739 ~ 30190971 (+) True LOC110529767
XM_036985254.1 mRNA downstream 299039 30227409 ~ 30243300 (+) False LOC110529768
TU790056 other upstream 135404 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 989878 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 989878 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 1222399 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 1369778 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 4199223 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 5526478 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 5684794 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 5975679 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 6772068 36700438 ~ 36700739 (+) True G702415

Expression Profile