RNA id: TU790962


Basic Information

Item Value
RNA id TU790962
length 4926
RNA type TUCP
GC content 0.43
exon number 5
gene id G694858
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30001763 ~ 30062168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGAAACGCAGAGCTGGGGCGGAAATGGAGGGGCTCAGGCTCAGTGGAGGGAACTGACATTGCaaactaggagaggagaggtagaactatcggagaggaggaaaggaaggggCTCGTCTGGACAACAGAAGGATTCTAAGagTATAGGTAAAGGCTCGTTGTGGTCCATAGATCCAGAGTACCGAAACAACCTGATCCAGGCTTTGAAGAAGACCCCGTACCACCCCTACTCCCCAGGACTGgttaccccctccacctctccccccacctctcctcagGCGTATCACAGTTCCTCAAGGCGTGATCCAAAATGGGGCCCGCATCAGGAGCCAGGGTCTGTTTCCTGTCATCCGACCCCTACCCATATGCTCCGTGGGAAGCAGAACCACTGCGATAAGgtCAGCTCTGGGGGATTACCTGACCCAAGGCAACATCGGCCACCCCTGtgactctccctccccccctcccagcGACGACCTCCAGGAGGACCACAACTACAGCACCGCCAAATCCCCCAGCATGCCCTGCTCTTCCCAGGGGCCCTCCACGTTAGACGATGATGATGACATCATCGCGGTGGAGGTCGGCGTCCACCGAGAGGTCAAATCGGAACCTCAAGAAGTCCCGCTGGACTCtgcctctgtctccttcctctcccagCATGCCCGGCGACGGGGCCTGCCCTGGACGAAAAACCGCCTACGGGCCCTGGGCGACACGCTGCCGCTGAAAAAGCGCCGTTCAGCAGCAGCAGCGGTGGAGAAGCCACCGTCGGAGAGCGATGACGAGGAGATGAAGGAGGCGGCGGGGTCGTTGCTTCACTTGGCGGGCGTCAGGGCGTGTCTCAACAACATCACTAACCGCGCCGCCAAGGCTGCTCAGAAGGAGAAAGAGCAGAAAGAGGCCCTAAGGAACTAACTAAGGCCTACACATCTGGTCTACACACCAACCACCAAGACCTAGAAACTAATAGCTAAGACACACTGCAAAGACCAACTGCTTTTAACAGTTGGTTCTCACGGTGTATTTTGTCTCTAATGCCTGATTCCCACTATAGGGCCGACCCTAACTGTAGCCTATACTGTGCTGGCTCGGATATATTCTTTTCAGATTTTGCTTTCCAGCATGGTTCCAGCAGCAATTATGGTGGAtgcgtaaccaggccagcccagtacagtttGGTTTGgcagtagtgtgaaaagggtatatGGCCAGGCCTGAGCGCAGAGAGACCTACAGTAGGACTACACACCAGGTCTACACACCGACCAACCAACCACCAACAGGCCAAGAGATAACGTTATTAAGCATTAGTCTCAATAGACactactccatctctctctctctttaacctttaacctctatctctcctccaggGGCATTAGGAGAATCCTACTTATTTATGGCAATATCAAAAATCTGTTTTTACTATACGTTTCCTGTGTGTTTCAACACTAACTCTGATGGGTAATTGATTCTCACGTGTCTCTGTTGATGTTTTTATGTTGTGTAAAGGGGATGCAAGCcatagaaaaacacattttttttgtcactaATTAGGGAAATACATGCTAAAAAAAATAGAACCATTGAGGAGAATAGCTGAGCGTTTTGTGTCATCTGTAACTTGTCAGAAGTGTATCTGTGAATTTGTAGCAATCTTCCAGTAATGTAAGCCAGGAAGTTGAGCCAATGATACTAACAGATTGAAAACTGTTCAAACTTGCTGCTCACACACGTCATCCTACGCCCATGAGCACAACATGTAAGACTGTGCCAAAGACGAGCGATCGGGTTGCTTCAATGTAGCCAATCTGACAGCTTACAAAGACAAACATAAAAGGCATAGCAACATCAGAAGACCTGTAGAGAAGAGATAGGAGAACACCGTAAATGTCTCAATAATTGTAAAATCCATTCTTAAAGAATCATGCTCTTATTTCTATTCATTACGGTGATTTCTATCACCAATAGTAAAAGCATCATTGAGAATGGGCATGATTCCATTAAGATCACTCCTTAGTATTTAAGCATAGTTAGAACTATACTGTTAATCTACTGTTCAGTTTTTGGTGCCATGGTGATGACTTAGTGCTGGGTCAGAGGCAATATACTGTATCTCATCCATCTTGTTCTTGTTTCTCAGCTGTGTTTGAAATGTCCTCCTGTTCCCTttttagtgcactatttttgaccagaaccACATGgatctggccaaaagtagtgcgctatgggGTTGATGGGCTCTGGACAAAAGGAgagcactatattgggaatagggtgcaatttcagACATACAGTAGCCTAGACGTCCCTGAAACTCTTCCAGTATTCCTCTTCCACAAACGGGAACGCCGGTTTAAATATAACCCATGCTACGACACCTGCCTATCATTTTTACAGACTCAGAAAACTATATACATAAAGTGTGGATTCGTTGTTGTTTCTTGCAATTCTGTTTGTATTGTTTCcccttcttcctctaccctcataAAAGTATAAGCAATTTGTCCAGTCTGGACAACTCTGTAAAAAGGTtagaaaatattttatttttcctttCTTAATTGAAGCAATTTGACCTGCAGGACTTTCTCAGTTATATTGCATGGGTGCTTGTAAATAAGATGCAAAAGTAAATCTTTTTTTATTCAAAGATCATGTaagataaacaatgtatttaGCATGAAGCATGACTTATTTTCATATAAACTTAGATCCTAGAAGAGAAAACAAAGGTTTTGCCACCAATTCTTATACACtcaattttatttaattttattttcgatttaaaaaaaaaatgtattgatatTGTATTTCTTCAGATGAGCGGGCTTTTAATGACATATCTTCTTCAGGGAGACATTTTATGGGGAAATCACTCTGCAATTATGAGGCCCGGCTACTCTGGGCTTTAAGTataacagacctgggttcaaaaactatttgaaattatttcaaataatTGAATATGTGCTTAATTGAGCTTGCCTGTTGCAATGCAACCAATAGtaaagtcccaaaagtgcaaaccccgccCACCTGGCACCCCAGCCAGGCTAAAGCAAACTGTAAAATGATTTGAAAGGTTTCaagtagtatttgaacccagtctGTTAGCTCTACGGCTAGATGGATCAACTGAAAAGCCTCTACTATGGCCTTCAGTCTTCTTCTGCCTCTTAAACAATAAATGTGTCAGTGTTCTAGTGTTGTTCAGAATATATCaatagtgtgtgagtgtgtgtgtgtccaacaaCCATACACCCTTTAACATTGTGCCTGCCCTCCAGACTTAATTGTATTCCGATGTCTTTAGCTGACATGTTTTCACATTGAACAGCACATATTTCTTTATTTCTGAAAgtgttttctctcattttgttctGTAAATGTGTTACCATTGGGTCCTAGTTTTCTCCTCCCTGGCAGACACTTCCCTGTAAATGGACGGAGCATTATGGACCTGTTTGACATGGAATTTAGAATTTGTCAGAATGTTCCACCGTTTTAACTGGCTCCAACTAGCACAGCCAAACCTTTTGTTGAAAGTTACCCTACCATGAACTGACTGAGGATGTATGTACATAGAGTGGAGTTACTGTACATGATGAACACGTTTCTGTACAAACAGCAGAGGTAATTAGGGGTTAGAAAGAGGTTGTGTGCAGACAGTAGGGAGAGGCAGAGTCAGAGAGAGCCAGACTCTGGTTTGGGTTTATGGGAAAGACTGAGAGTGACTGACAGCTAGACTGGGAGTTAGACAAGCAAATGACAGCAGAGTTCCATTGTCATAGTATTCTATCAACTTTGATACGGAACACTGACTATTCTAttcaattcaatgtgtttctTCTATCAATGTTGACATGAAATAGACTCACTCCCCGTATACCTCACTGCCATCTCCACTTCCTCTCTTGACACTAGAGAAGTGTTATGGTGTTACAGGTCAAGCCCTCTGTGTTATTTGCAGTAGGAAGTCAGTGAACTGGTGACTAATAGTAGAGTCTGCCGTGGCAAGTCAAGGAGAATGTGTTGCTTAAGTAACCACCATCTCCTCCAGTGACTCACATGgtgagtgtgtcccaaatggcactacttttgaccagagctaatagggctctgttcaaaagttgtgcactatatagggaataggatgccatttcggACACTTCCAGTGACATGCAGGGAAGGAAGGTGAAGTTAGGACCATATAAGGGTCTGCTTGACAAATAGAATGATACCGGGAAATAGGACTGAGTTTTTAATGCAAAGGGAAGAAAAATAAGAAACTCTATCACTGCCTGAAAAGCCCTCGAATGAGAAACAAATGTGCTTAttttatttgaactaaaacctgccAAACTAAACCATGCTCaaagtgtgcatcccaaatggcaactcattccctatatagtgcacttttcTTTCAAACGTAGTGCATTacaaagagaatagggtgccatttgggagtcgCCCAAGGCAAGCCTGCCAGCCAGTCCGCCATTTTGTTTTCtattaacgttttttttttttgtgtttgtttactcTGACAAGACGTTACAATACTGCCACGTTAATGACTATTTGAGAAGGGTCAGAAAGCCATAGAATAGAGATGTCAAACGCAAACAACTATGTTGCTCTATGAGAAGAATCGATGTAATGCAGAGTGCACCCAGCTTGGTTGGTTTTCCAATGAATGTTTGATTATTTCCTTGTTGTGCAATCACATTGCCAAAGAACGATTTCAAGCGATTTCAGCGATTTCATTCATGTAAATATCACGTTGTCCAATACCgtggcaaaaaaaaaatgtagaaatgttgtttttttcttttcaaTTTTTCTGAAACCTTCAATAATGTTTATGTGGTGTATTGTCTTCCAGTTGCAATGATTAAAGTTGACCTGAACTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790786 lncRNA downstream 69720 29931811 ~ 29932043 (-) True G694706
TU790785 lncRNA downstream 70378 29931000 ~ 29931385 (-) True G694705
TU790776 lncRNA downstream 80310 29921128 ~ 29921453 (-) True G694697
TU790753 lncRNA downstream 106990 29890662 ~ 29894773 (-) True LOC110529761
TU790751 lncRNA downstream 113182 29888306 ~ 29888581 (-) True G694673
TU791003 lncRNA upstream 32586 30094754 ~ 30094981 (-) True G694898
TU791006 lncRNA upstream 38014 30100182 ~ 30100426 (-) True G694901
TU791009 lncRNA upstream 41804 30103972 ~ 30104230 (-) True G694904
TU791013 lncRNA upstream 45638 30107806 ~ 30112851 (-) True G694908
TU791025 lncRNA upstream 63577 30125745 ~ 30125947 (-) True G694919
XM_036985246.1 mRNA downstream 15404 29972511 ~ 29986359 (-) False gtf2a1
XM_036985247.1 mRNA downstream 15404 29972511 ~ 29986359 (-) False gtf2a1
XM_036985248.1 mRNA downstream 15404 29972511 ~ 29986359 (-) False gtf2a1
XM_036985250.1 mRNA downstream 15404 29972511 ~ 29986359 (-) True gtf2a1
XM_036985249.1 mRNA downstream 16741 29972511 ~ 29985022 (-) False gtf2a1
XM_021612284.2 mRNA upstream 154840 30217008 ~ 30227240 (-) False LOC110529769
XM_021612285.2 mRNA upstream 154840 30217008 ~ 30227240 (-) False LOC110529769
XM_021612286.2 mRNA upstream 154840 30217008 ~ 30227240 (-) False LOC110529769
XM_021612287.2 mRNA upstream 154840 30217008 ~ 30227240 (-) False LOC110529769
XM_036985272.1 mRNA upstream 157704 30219872 ~ 30227240 (-) False LOC110529769
TU789639 other downstream 1042931 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1407332 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1519865 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 1885715 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 2685828 27315568 ~ 27315935 (-) True G691747
TU792305 other upstream 784734 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 792939 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1415186 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 1595558 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 2152318 32214486 ~ 32217549 (-) False LOC110529804

Expression Profile