RNA id: TU790905


Basic Information

Item Value
RNA id TU790905
length 202
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G694819
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30145266 ~ 30145467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCCTGTACACGCAAATGCATACACAAATATGCATGTATAcaagcacccacacacacactccccttatTAACCATGTTTTTCTAGTCCTCTTTAATCTACCGCAAACACATTTCCCACAGTGATGTCGTCAAAGCTTGATACTTGTCTGAACCAAATTGAGCAACACTCAGTATAATGGTGACAAAGGCACGGTAGTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790904 lncRNA upstream 286 30144707 ~ 30144980 (+) True G694818
TU790903 lncRNA upstream 573 30143941 ~ 30144693 (+) True G694817
TU790902 lncRNA upstream 3052 30141956 ~ 30142214 (+) True G694816
TU790901 lncRNA upstream 3954 30141092 ~ 30141312 (+) True G694815
TU790900 lncRNA upstream 4512 30140480 ~ 30140754 (+) True G694814
TU790870 lncRNA downstream 4538 30150005 ~ 30150292 (+) False LOC110529765
TU790869 lncRNA downstream 10968 30156435 ~ 30158257 (+) True LOC110529765
TU791112 lncRNA downstream 55999 30201466 ~ 30201774 (+) True G694986
TU791096 lncRNA downstream 76920 30222387 ~ 30222914 (+) True G694970
TU791133 lncRNA downstream 124059 30269526 ~ 30272291 (+) True G695005
XM_021612271.2 mRNA upstream 175145 29939109 ~ 29970121 (+) True LOC110529762
XM_021612253.2 mRNA upstream 277691 29340915 ~ 29867575 (+) False LOC110529758
XM_021612277.2 mRNA downstream 4521 30149988 ~ 30158324 (+) False LOC110529765
LOC110529766 mRNA downstream 22654 30168121 ~ 30173329 (+) True LOC110529766
XM_036985253.1 mRNA downstream 30272 30175739 ~ 30190971 (+) True LOC110529767
XM_036985254.1 mRNA downstream 81942 30227409 ~ 30243300 (+) False LOC110529768
XM_036985255.1 mRNA downstream 81942 30227409 ~ 30243300 (+) False LOC110529768
TU790056 other upstream 352519 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 1206993 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 1206993 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 1439514 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 1586893 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3982126 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 5309381 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 5467697 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 5758582 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 6554971 36700438 ~ 36700739 (+) True G702415

Expression Profile