RNA id: TU791893



Basic Information


Item Value
RNA id TU791893
length 271
lncRNA type intronic
GC content 0.35
exon number 2
gene id G695689
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30826636 ~ 30827798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cgttatataggtatgcatgtcATCTacttacgttatataggtatgcacgtcatctacttactttatataggtatgcacgtcatctacttacgttatataggtatgcatgtcATCTacttacgttatataggtatgcacgtcatctacttactttatataggtatgcacgtcatctacttacgttatataggtatgcatgtcATCTACTTActttatataggtatgcatgtcATCTACTTACGTTCTATaggtatgcacctcatctacttac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU791888 lncRNA upstream 3561 30823097 ~ 30823389 (+) True G695686
TU791882 lncRNA upstream 14428 30812258 ~ 30812522 (+) True G695680
TU791881 lncRNA upstream 15021 30811643 ~ 30811929 (+) True G695679
TU791879 lncRNA upstream 16968 30809728 ~ 30809982 (+) True LOC110529772
TU791818 lncRNA upstream 37121 30789381 ~ 30789829 (+) True G695618
TU791895 lncRNA downstream 10101 30837711 ~ 30837990 (+) True G695691
TU791907 lncRNA downstream 22750 30850360 ~ 30850614 (+) True G695703
TU791908 lncRNA downstream 25545 30853155 ~ 30854261 (+) True G695704
TU791909 lncRNA downstream 27191 30854801 ~ 30855122 (+) True G695705
TU791937 lncRNA downstream 73499 30901109 ~ 30901445 (+) True G695730
XR_005052853.1 mRNA upstream 161492 30655621 ~ 30665458 (+) True LOC118965506
XM_021612288.2 mRNA upstream 563466 30251466 ~ 30263484 (+) True LOC110529770
XM_036985255.1 mRNA upstream 583650 30227409 ~ 30243300 (+) False LOC110529768
XM_021612292.2 mRNA downstream 41469 30869079 ~ 30878195 (+) False LOC110529772
NM_001165090.2 mRNA downstream 216417 31044027 ~ 31047421 (+) False ndufb1
XM_036985275.1 mRNA downstream 227600 31055210 ~ 31097963 (+) True LOC110529776
LOC110529228 mRNA downstream 301900 31129510 ~ 31140471 (+) True LOC110529228
XM_021614359.2 mRNA downstream 317924 31145534 ~ 31146912 (+) True LOC110531085
TU790056 other upstream 1034203 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 1888677 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 1888677 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2121198 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2268577 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3299983 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4627238 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4785554 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 5076439 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5872828 36700438 ~ 36700739 (+) True G702415

Expression Profile