RNA id: TU791960



Basic Information


Item Value
RNA id TU791960
length 340
lncRNA type intronic
GC content 0.47
exon number 1
gene id G695752
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30938264 ~ 30938603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccacaggatgtttttgtgctggtcaagggcagacaggtctggagtgaaccaaggactatatctattcctagttctacattttttgaatggggcatgcttatttaagatggtgaggaaggcacttttaaagaatagccaggcatcatctactgacgggatgaggttaaTGTAATTCCAGGATATCCCGGCCAGGTCGATTGGAAAGGTGtttgggagcgtttgacagtgatgaggggtggtcgtttggtcgcagacccattatggatgcaggcaatgaggcagtgatcgctgagatcttgattgaaaacagcagaggtgtattcggagggcgagttagtta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU791954 lncRNA upstream 7033 30930954 ~ 30931231 (+) True G695746
TU791952 lncRNA upstream 9153 30928871 ~ 30929111 (+) True G695744
TU791949 lncRNA upstream 13613 30923850 ~ 30924651 (+) True G695741
TU791948 lncRNA upstream 14750 30923227 ~ 30923514 (+) True G695740
TU791947 lncRNA upstream 16680 30921320 ~ 30921584 (+) True G695739
TU791961 lncRNA downstream 2301 30940904 ~ 30941137 (+) True G695753
TU791962 lncRNA downstream 3899 30942502 ~ 30942805 (+) True G695754
TU791964 lncRNA downstream 5606 30944209 ~ 30944530 (+) True G695756
TU791965 lncRNA downstream 5979 30944582 ~ 30944803 (+) True G695757
TU792006 lncRNA downstream 67634 31006237 ~ 31011784 (+) True G695796
XM_021612290.2 mRNA upstream 60069 30809489 ~ 30878195 (+) False LOC110529772
XM_021612292.2 mRNA upstream 60069 30869079 ~ 30878195 (+) False LOC110529772
XR_005052853.1 mRNA upstream 272806 30655621 ~ 30665458 (+) True LOC118965506
XM_021612288.2 mRNA upstream 674780 30251466 ~ 30263484 (+) True LOC110529770
XM_021612283.2 mRNA upstream 694964 30227507 ~ 30243300 (+) True LOC110529768
NM_001165090.2 mRNA downstream 105424 31044027 ~ 31047421 (+) False ndufb1
XM_036985275.1 mRNA downstream 116607 31055210 ~ 31097963 (+) True LOC110529776
LOC110529228 mRNA downstream 190907 31129510 ~ 31140471 (+) True LOC110529228
XM_021614359.2 mRNA downstream 206931 31145534 ~ 31146912 (+) True LOC110531085
XM_036985276.1 mRNA downstream 219269 31157872 ~ 31204182 (+) False si:dkey-174m14.3
TU790056 other upstream 1145517 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 1999991 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 1999991 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2232512 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2379891 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3188990 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4516245 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4674561 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4965446 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5761835 36700438 ~ 36700739 (+) True G702415

Expression Profile