RNA id: TU792006



Basic Information


Item Value
RNA id TU792006
length 309
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G695796
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31006237 ~ 31011784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggccagggtgtgacatgggttaattatgtggtgtgttttgtcttgggtttttgtaggtattgggattgtggtatagtggggttgtctaggaaagtctatggttgtcTGAAGTggtcctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattcgttgagtgtttcgtgggtgattgttcctgtctctgtgtttgtttgcaccagataggctgtttaggttttcacggtACGTTTCTTGTTtggtattgttcgtgtttattaaacatgtatcaaaattaccac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU791965 lncRNA upstream 61434 30944582 ~ 30944803 (+) True G695757
TU791964 lncRNA upstream 61707 30944209 ~ 30944530 (+) True G695756
TU791962 lncRNA upstream 63432 30942502 ~ 30942805 (+) True G695754
TU791961 lncRNA upstream 65100 30940904 ~ 30941137 (+) True G695753
TU791960 lncRNA upstream 67634 30938264 ~ 30938603 (+) True G695752
TU792019 lncRNA downstream 19233 31031017 ~ 31032782 (+) True G695809
TU792030 lncRNA downstream 32454 31044238 ~ 31047423 (+) True ndufb1
TU792034 lncRNA downstream 38667 31050451 ~ 31051166 (+) True G695823
TU792037 lncRNA downstream 42447 31054231 ~ 31054493 (+) True G695826
TU792050 lncRNA downstream 52003 31063787 ~ 31072533 (+) True G695838
XM_021612290.2 mRNA upstream 128042 30809489 ~ 30878195 (+) False LOC110529772
XM_021612292.2 mRNA upstream 128042 30869079 ~ 30878195 (+) False LOC110529772
XR_005052853.1 mRNA upstream 340779 30655621 ~ 30665458 (+) True LOC118965506
XM_021612288.2 mRNA upstream 742753 30251466 ~ 30263484 (+) True LOC110529770
XM_021612283.2 mRNA upstream 762937 30227507 ~ 30243300 (+) True LOC110529768
NM_001165090.2 mRNA downstream 32243 31044027 ~ 31047421 (+) False ndufb1
XM_036985275.1 mRNA downstream 43426 31055210 ~ 31097963 (+) True LOC110529776
LOC110529228 mRNA downstream 117726 31129510 ~ 31140471 (+) True LOC110529228
XM_021614359.2 mRNA downstream 133750 31145534 ~ 31146912 (+) True LOC110531085
XM_036985276.1 mRNA downstream 146088 31157872 ~ 31204182 (+) False si:dkey-174m14.3
TU790056 other upstream 1213490 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 2067964 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 2067964 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2300485 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2447864 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3115809 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4443064 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4601380 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4892265 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5688654 36700438 ~ 36700739 (+) True G702415

Expression Profile