RNA id: TU792019



Basic Information


Item Value
RNA id TU792019
length 713
lncRNA type antisense_over
GC content 0.54
exon number 3
gene id G695809
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31031017 ~ 31032782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAGATGTGTGTCTCACTGGTGGCGTCCACAGTCTCCTGCAGCTTAGGTGTGTAGACCTTAATGTCCTTGGTGAAGGCCTTGCAGGACTCGGCCAGGTCCAGGCTGGCCTCGGGAGGGCCGTGCACGATCACCAGCTGCCGAGGCTTCATCTGATTGATGATCTTCTTGATAGAGTCGCCGTCTGAACGCCCCTCGTAGTCGATGTACGTCACCCTGGCTTTGATCTCCAGGTTCTCTGTAGTGGAGGTACACTTGGTGGGTACTTTGGATGAGAGGTCCTGGTCCATGGGTTCGTCTCCTTTGGCCATGCCCGACTCCAGCttgttcttctcctcctctgtggcCTGGAGCTCTGGTACCAGGAAGTCCTCCGGCCTGATGATCTCTCCGTACTCATCCCATTTGACCCTCTCCTCGTGGGTGGGGAACATGGGGTAGGACTTCTTGGCCTGTTTGAAGAAGCTGCCCTTGCGGACGCCGTCTCCCTTCATCATCAGGTCGTGGTGTTTGGTCTTCACCATCGCCGGCAGCTCCAGGTCATCCTCCATGTCGCTCTCGTCACTGGAGTCCACATCCACCCTGAGAGACACAAATATattagactcacacacacacaatcttgctGTGTTTCTTCATCTCAAAAACAAACATCTTCGTTCCCGGAGACCAACTTCATGAATCTGTATAGTATGTCCTCCACGCACACATGCGcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU792006 lncRNA upstream 19233 31006237 ~ 31011784 (+) True G695796
TU791965 lncRNA upstream 86214 30944582 ~ 30944803 (+) True G695757
TU791964 lncRNA upstream 86487 30944209 ~ 30944530 (+) True G695756
TU791962 lncRNA upstream 88212 30942502 ~ 30942805 (+) True G695754
TU791961 lncRNA upstream 89880 30940904 ~ 30941137 (+) True G695753
TU792030 lncRNA downstream 11456 31044238 ~ 31047423 (+) True ndufb1
TU792034 lncRNA downstream 17669 31050451 ~ 31051166 (+) True G695823
TU792037 lncRNA downstream 21449 31054231 ~ 31054493 (+) True G695826
TU792050 lncRNA downstream 31005 31063787 ~ 31072533 (+) True G695838
TU792040 lncRNA downstream 68587 31101369 ~ 31101794 (+) True G695828
XM_021612290.2 mRNA upstream 152822 30809489 ~ 30878195 (+) False LOC110529772
XM_021612292.2 mRNA upstream 152822 30869079 ~ 30878195 (+) False LOC110529772
XR_005052853.1 mRNA upstream 365559 30655621 ~ 30665458 (+) True LOC118965506
XM_021612288.2 mRNA upstream 767533 30251466 ~ 30263484 (+) True LOC110529770
XM_021612283.2 mRNA upstream 787717 30227507 ~ 30243300 (+) True LOC110529768
NM_001165090.2 mRNA downstream 11245 31044027 ~ 31047421 (+) False ndufb1
XM_036985275.1 mRNA downstream 22428 31055210 ~ 31097963 (+) True LOC110529776
LOC110529228 mRNA downstream 96728 31129510 ~ 31140471 (+) True LOC110529228
XM_021614359.2 mRNA downstream 112752 31145534 ~ 31146912 (+) True LOC110531085
XM_036985276.1 mRNA downstream 125090 31157872 ~ 31204182 (+) False si:dkey-174m14.3
TU790056 other upstream 1238270 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 2092744 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 2092744 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2325265 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2472644 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3094811 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4422066 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4580382 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4871267 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5667656 36700438 ~ 36700739 (+) True G702415

Expression Profile