RNA id: TCONS_00035602


Basic Information

Item Value
RNA id TCONS_00035602
length 1351
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_018067
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23650832 ~ 23657304 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGTGTAGTCAATATGGCGGCGTCCATAACTTCAGTTCACTTTTAGCgacaaacaataaagaaaaaaactagCGTATGATATTGACTTTTAACGCTGGGGATGTCCAGGCTGGCTGTGGTGTTCGGGGGTTCGCGTGGCATTGGGCGAGCAGTCTCTAAGCTGTTGGCACAGAGGGGTCACAGGATTGTGCTGTTGTCTAGGAATAAAGAGGCTGCACAGGCCACTGCTCAATCTCTCCCTGGAGAAAACCATTTGGGCCTAAGCTGCGATGTCTCAAAAGAAGAAGAGGTTCAGAAAGCGTTTGAGACCATCAATAAGACCTGTGGCACTGTAGGGTTCCTGGTTAATGCGGCTGGCATCAACAGagatGCGCTGTTATTGAGGAGTAAATCTGAAGACATGCTGTCTGTTTTGCACACTAACCTGCTGGGCTCCATGCTGACATGTAAGGCCGCTGTACGAAACATGCTCAGTCATGGAGGAGCCATTGTCAACATCGGTTCAGTGGTGGGTGTGAAGGGTAATGCTGGTCAGTGTGTGTACAGCGCCAGTAAAGCTGGACTAGAGGGATTCACTCGCTCACTGGCAAAGGAAGTGGCTTCTCGTAACATACGAGTGAACTTGGTGGCTCCAGGATTGATTCACACAGACATGACTGCAGGACTGGCAGAAGAAGCAGCGGTGAGGACCATTCCATTGGGCCGTTTTGGGGAACCTGCAGAAGTGGCCCAGGCTGTGCTTTTCCTCCTGGAGTCGCCTTATATCACAGGACAGATTCTGCTGGTGGACGGAGGACTACAGCTGCTGATGTAATGATTCTATGAGTCACTGAAGTATTAAAgtgcatatttttgttttggtgaTTATACCCAATATCTCTATTTAGGGGTTGAGTCAAAGCTCGATATTGTTAATCTTCTTCTCATCACTCTGTGGAATTCTGAGTCATGTAAAACATTGTGTAAGAGTAGTTTTGGACCATCTGGATTagattaatgttatttttagttCACTGGAGTTTTTGGGTTATTGCTGCATGTTCCATACTTAAGATAATGGAGGTCACAGATCAACCAGCGGAGGATATGACTCGTTTTGTGATGTCATTTCTATTTTTAGCATACATAGTTTATTCAGATATAAATGATGTTAGAATCGCAGGTTTGTAAAAGATCAGAAATATACAGATTTTAAAATCAAGAATGAactaaacactgaaaaaaaatatttatagatgattccttgaattaactacatttttttttcgttaagtggttgtaatcaatttatttgggctaaatttaaacaagttaagttgaatattattacatttgtttaaatttaacaca

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0051290 protein heterotetramerization biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0048038 quinone binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0047025 3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity molecular_function

KEGG:

id description
ko00061 Fatty acid biosynthesis

ZFIN:

id description
ZDB-GENE-040426-1796 Predicted to enable 3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity and quinone binding activity. Predicted to be involved in fatty acid biosynthetic process and protein heterotetramerization. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be part of oxidoreductase complex. Orthologous to human CBR4 (carbonyl reductase 4).

Ensembl:

ensembl_id ENSDART00000016913

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035600 lncRNA downstream 162688 23480453 ~ 23488144 (-) False XLOC_018066
TCONS_00036473 lncRNA downstream 454174 23194788 ~ 23196658 (-) True XLOC_018060
TCONS_00036472 lncRNA downstream 479473 23169183 ~ 23171359 (-) True XLOC_018059
TCONS_00036835 lncRNA downstream 481864 23160676 ~ 23168968 (-) False XLOC_018059
TCONS_00036836 lncRNA upstream 251290 23908594 ~ 23946098 (-) True XLOC_018071
TCONS_00035610 lncRNA upstream 407385 24064689 ~ 24122757 (-) False XLOC_018072
TCONS_00035615 lncRNA upstream 495374 24152678 ~ 24159764 (-) False XLOC_018073
TCONS_00035617 lncRNA upstream 514364 24171668 ~ 24181988 (-) False XLOC_018073
TCONS_00036474 lncRNA upstream 530673 24187977 ~ 24188631 (-) True XLOC_018074
TCONS_00035601 mRNA downstream 156120 23488517 ~ 23494712 (-) True XLOC_018066
TCONS_00035599 mRNA downstream 156137 23475381 ~ 23494695 (-) False XLOC_018066
TCONS_00035598 mRNA downstream 178513 23446243 ~ 23472319 (-) True XLOC_018065
TCONS_00035597 mRNA downstream 209877 23431893 ~ 23440955 (-) True XLOC_018064
TCONS_00035596 mRNA downstream 211821 23431485 ~ 23439011 (-) False XLOC_018064
TCONS_00035604 mRNA upstream 181510 23838814 ~ 23842631 (-) True XLOC_018068
TCONS_00035605 mRNA upstream 190076 23847380 ~ 23852174 (-) True XLOC_018069
TCONS_00035606 mRNA upstream 203554 23860858 ~ 23876291 (-) True XLOC_018070
TCONS_00035607 mRNA upstream 219995 23877299 ~ 23946296 (-) False XLOC_018071
TCONS_00035608 mRNA upstream 315644 23972948 ~ 24122881 (-) False XLOC_018072
TCONS_00035595 other downstream 225178 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 402193 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035590 other downstream 424456 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035586 other downstream 487575 23161279 ~ 23163257 (-) False XLOC_018059
TCONS_00035582 other downstream 568642 23082069 ~ 23082190 (-) False XLOC_018056
TCONS_00035611 other upstream 425835 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035616 other upstream 495495 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035626 other upstream 1711206 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035635 other upstream 1880276 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 1881051 25538355 ~ 25540754 (-) True XLOC_018086

Expression Profile

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