RNA id: TU792147



Basic Information


Item Value
RNA id TU792147
length 909
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G695922
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31211469 ~ 31216638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCAGCATAGCATGGCTTGTGGCAGTAGGGTGTTCCATCATGCTGTGAACAGAAGGAAAGACAACAGCAAAAGTATCTGGGAACAAACACATTGGACTGTGTTGGGCTTCATTTTGGTACTAAACTCAAGTCAAAAAATACCCCTATAACATATTGATGTCCATTCCAGCATTGAGGGCTGCATGACTGACTTGAGTTTAAAATGGCTGACGTAGCTTTGGAGGGATCTTTGGATCTTTTAAACAAACATGCCACAAATAAGAGAGGAACCCAATGGATTTCAGATTGCACTGTACACTACACGTAAAACCATATCCTTTAGTAGCCTGTATGAACCTCAAGCCAATCCCATCTGTTCGTAACTGGCCTAGCctcctgtacagtactgtacagtgccCATATTGATGAATAGGCTCTGTCAGAATGCTGATACTCGCCCCATGAGGCCCtaaccctctctaaccctcccaGAGATCTATGGTAACAGAGCCAAAAATGTCTGCACAGTTACTCCTCTCTATTGTACACAAAGCCCCCTGTGGTTGTcccctgactgtctctgtgtgggGTAAGCTACCGACTCCTCTTACTTCAGCATGGCCCCCTGGGTTCAGGGTCTTGTTGCAGCGCTCACATTTCAGACAGAACTTGTGCCAGTCTTTCCCCAGGGATGTCACCTTCTccgCAAAATAAACCGTCTTGTCGCATTTAGGACATTTCGATGCCATGTTCCATATATTCTGGACTAAAGCCTGGAGACGAGAGAATTTGATATcctttttcttttttaaattagCAATTTGAATCGACGATTTCCCCCCTAGATTGTATTGATGGGCAAGTGGAAATAGCAGGCTGCATCCCCATACATTATTCTGCTAAATTTACATAGCCCCTCCTCTATGATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU792109 lncRNA upstream 26097 31137646 ~ 31185372 (+) True G695887
TU792041 lncRNA upstream 109116 31102028 ~ 31102353 (+) True G695829
TU792040 lncRNA upstream 109675 31101369 ~ 31101794 (+) True G695828
TU792050 lncRNA upstream 138936 31063787 ~ 31072533 (+) True G695838
TU792037 lncRNA upstream 156976 31054231 ~ 31054493 (+) True G695826
TU792155 lncRNA downstream 2075 31218713 ~ 31219120 (+) True G695926
TU792218 lncRNA downstream 127687 31344325 ~ 31344555 (+) True G695989
TU792222 lncRNA downstream 132574 31349212 ~ 31349433 (+) True G695993
TU792224 lncRNA downstream 134052 31350690 ~ 31351223 (+) True G695995
TU792228 lncRNA downstream 142517 31359155 ~ 31359542 (+) True G695999
XM_036985276.1 mRNA upstream 7287 31157872 ~ 31204182 (+) False si:dkey-174m14.3
XM_036985277.1 mRNA upstream 7287 31167989 ~ 31204182 (+) False si:dkey-174m14.3
XM_021612298.2 mRNA upstream 7287 31168477 ~ 31204182 (+) False si:dkey-174m14.3
XM_021612302.2 mRNA upstream 7287 31168477 ~ 31204182 (+) False si:dkey-174m14.3
XM_021612303.2 mRNA upstream 7287 31172702 ~ 31204182 (+) True si:dkey-174m14.3
XM_036985279.1 mRNA downstream 3517 31220155 ~ 31307462 (+) False rad51b
XM_036985280.1 mRNA downstream 3517 31220155 ~ 31307462 (+) False rad51b
XM_036985281.1 mRNA downstream 3517 31220155 ~ 31307462 (+) False rad51b
XM_036985278.1 mRNA downstream 8834 31225472 ~ 31307461 (+) False rad51b
XM_021612305.2 mRNA downstream 8838 31225476 ~ 31280441 (+) False rad51b
TU790056 other upstream 1418722 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 2273196 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 2273196 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2505717 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2653096 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 2910955 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4238210 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4396526 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4687411 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5483800 36700438 ~ 36700739 (+) True G702415

Expression Profile