RNA id: TU792218



Basic Information


Item Value
RNA id TU792218
length 231
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G695989
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31344325 ~ 31344555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCATGTGCATGAGTTTGGAGAGGTTCATGGGGGAGGTGAGGAAGGTTTTTGATGCCCCATTCTCCGGGAGAGAAGCTGCCTAGAAGCTAATCCAGCTCCGGCAGGATACCCAACTATGCTGTGGATTTCCGCATGTTGGCCGCGGAGACTGCGTGGAACCAGGAAGCActgttcgacatgttcctgcaCAGCGTCTCGGAGGAGGTTAAGGACGAGCTTGCTGCTCGGGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU792155 lncRNA upstream 125205 31218713 ~ 31219120 (+) True G695926
TU792147 lncRNA upstream 127687 31211469 ~ 31216638 (+) False G695922
TU792148 lncRNA upstream 127687 31211469 ~ 31216638 (+) True G695922
TU792109 lncRNA upstream 158953 31137646 ~ 31185372 (+) True G695887
TU792041 lncRNA upstream 241972 31102028 ~ 31102353 (+) True G695829
TU792222 lncRNA downstream 4657 31349212 ~ 31349433 (+) True G695993
TU792224 lncRNA downstream 6135 31350690 ~ 31351223 (+) True G695995
TU792228 lncRNA downstream 14600 31359155 ~ 31359542 (+) True G695999
TU792229 lncRNA downstream 15801 31360356 ~ 31360605 (+) True G696000
TU792693 lncRNA downstream 134111 31478666 ~ 31478902 (+) True G696423
XM_021612315.2 mRNA upstream 460 31339232 ~ 31343865 (+) True LOC110529782
XM_036985279.1 mRNA upstream 36863 31220155 ~ 31307462 (+) False rad51b
XM_036985280.1 mRNA upstream 36863 31220155 ~ 31307462 (+) False rad51b
XM_036985281.1 mRNA upstream 36863 31220155 ~ 31307462 (+) False rad51b
XM_036985282.1 mRNA upstream 36863 31226178 ~ 31307462 (+) False rad51b
XM_021612317.2 mRNA downstream 24197 31368752 ~ 31376588 (+) True psmc6
XM_021612316.2 mRNA downstream 36552 31381107 ~ 31393074 (+) True ddhd1b
XM_036985286.1 mRNA downstream 49639 31394194 ~ 31402564 (+) False stxbp6l
XM_021612319.2 mRNA downstream 49640 31394195 ~ 31402564 (+) True stxbp6l
XM_036985288.1 mRNA downstream 205844 31550399 ~ 31573573 (+) True LOC110529230
TU790056 other upstream 1551578 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 2406052 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 2406052 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2638573 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2785952 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 2783038 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4110293 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4268609 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4559494 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5355883 36700438 ~ 36700739 (+) True G702415

Expression Profile