RNA id: TU792224



Basic Information


Item Value
RNA id TU792224
length 534
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G695995
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31350690 ~ 31351223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaacaacactgtcatctcagattttcaaaatatgcttctcaaccataggaaaacaatcatttgtgtaaaagtagctagctagcgttagcatttagcgttagcatttagcgttagcattagcgttagcatccagcacgcaacattaacaaaaacataaaagccttcaaataaaatcatttacctttgaagaacttctgatgttttcaatgaggatactctcagttagatagcagatgctcagtttttccaaaaagattccttgtgtattagaaatagctccgttttatacatcacatttggctaccaaaaaaaatccgaaaattcagtcctcaaaacgcaaacttttttccaaattaactccataatatcgactgaaaacatggcaaacgttgtttagaatcaatcatcaaggtgtttttcacatatctcttcattgatacatcgttcttggacacatgctttctcccctgaatcaaatggtaaagtagaagcagctggcaattgcgcaccgaattcgacgcaggacaccaggcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU792222 lncRNA upstream 1257 31349212 ~ 31349433 (+) True G695993
TU792218 lncRNA upstream 6135 31344325 ~ 31344555 (+) True G695989
TU792155 lncRNA upstream 131570 31218713 ~ 31219120 (+) True G695926
TU792147 lncRNA upstream 134052 31211469 ~ 31216638 (+) False G695922
TU792148 lncRNA upstream 134052 31211469 ~ 31216638 (+) True G695922
TU792228 lncRNA downstream 7932 31359155 ~ 31359542 (+) True G695999
TU792229 lncRNA downstream 9133 31360356 ~ 31360605 (+) True G696000
TU792693 lncRNA downstream 127443 31478666 ~ 31478902 (+) True G696423
TU792697 lncRNA downstream 132434 31483657 ~ 31483896 (+) True G696427
TU792685 lncRNA downstream 135567 31486790 ~ 31487759 (+) False G696416
XM_021612315.2 mRNA upstream 6825 31339232 ~ 31343865 (+) True LOC110529782
XM_036985282.1 mRNA upstream 43228 31226178 ~ 31307462 (+) False rad51b
XM_036985283.1 mRNA upstream 43228 31226203 ~ 31307462 (+) True rad51b
XM_021612305.2 mRNA upstream 70249 31225476 ~ 31280441 (+) False rad51b
XM_021612317.2 mRNA downstream 17529 31368752 ~ 31376588 (+) True psmc6
XM_021612316.2 mRNA downstream 29884 31381107 ~ 31393074 (+) True ddhd1b
XM_036985286.1 mRNA downstream 42971 31394194 ~ 31402564 (+) False stxbp6l
XM_021612319.2 mRNA downstream 42972 31394195 ~ 31402564 (+) True stxbp6l
XM_036985288.1 mRNA downstream 199176 31550399 ~ 31573573 (+) True LOC110529230
TU790056 other upstream 1557943 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 2412417 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 2412417 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2644938 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2792317 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 2776370 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4103625 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4261941 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4552826 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5349215 36700438 ~ 36700739 (+) True G702415

Expression Profile