RNA id: TU793493


Basic Information

Item Value
RNA id TU793493
length 5274
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G697196
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32126449 ~ 32131747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGGTTTATTTTCGTGTCCGTACACATTACATTAGCAGACAATacacagctagctaactaacaacaTGCTTCATGATCAATAGATGAATATAGAAGTTCAGTAACCTTATTATACAGTGTCATTAATTGCATAATATAGCTACAATACACAGGTAGGAAACGTTCGCTAACCAACTAATCGAAATAATTTCTGCGTCCTCACAATAACAACGCGACGTGCTAGCTGTTAGCTGAATGCAGACAATTTGCTGAACCATAGTTTGATAGCTCTTACGCTAGCATCTTGAAGTTACATTAGAACAAACCACGTTTCATTTTATCAGTATCATGGAAGGATTATATTTAGTAAAAGCTCAATTGCGACTGAAAACATTGATAATTCCCTGCTGCTTGCTTGCATAAACTTTAGCTTTTTATTTTTCTAAAGTATGGGTATCAACGTGGGTCGCGACCTGTCAGAGTAACTTGATAATTATTTCATGaattactggaattgatttggccaagtgcaaCTGCGCTCTCTGTTCGGTGCGCTCTCTGCTTAGCAGCAGATGTCAGTGTGCTTCGCGGTTTACCGGATATTTTTCTGCAGTTTTCTTGAAGATCACTCTGCGACACACATTGACTTGTCATTTCAACTCGCCATCACTCACTGCTGTCATCAAATGGATTCATGCTAGCCACAAGTTCTGACTGAACTCAGTTGTCATGAAACGCAAATACAGcgatgagtttctctctctttcatacaaactttgagaaaaaacgaggagcgcccacaatgtgttttgtgcGGGGAAGTGCTTAGTAATGAGTCCTTCAAAacgaacaaattaataaaacgaCACATCCTGGCCAAACATCCACAGGATGATCGTAAACCCagggagttctttcagaacagggcagaatgctccaggaaacagtgcttcgacAGTGGAAAAGGAAGTCAGCTAGCAGggcattgttgtcattttataacGGGTGATGAGCAGAAATAAGGGTGTACTAACTCTCATAGTAGTAGATGTGAatttctctttcaaacaatccctTGGCCTTATACACAGATAATAATTAACATTAACCAAAGCAAACTACCTAGCTTAGTGCAACCCTTAGAAACAGCACagatgaagatttttttttttaaagatcaggcctactgtacaccttactgtagaaatgactgTTGAAAActagtctaggttggaactgttgctgttaaaatactcTGAACTGGAATAACATAATTTAAGCAAGATGCTTTttgaggcaaacacacacacagttctgggttgctccTCTACagcaggaagtggtctcctgGCTGACTGAGgaagcagtagatgttctgatccagtttggcaccacatacctaTGCGAGTCAGGGTTCTCAACTCTGACATAGTTACAAAACAAGTACAGAAACAGTGTCAATGCTGAGTATGACCTGGGTGTTGTACTGTCAGACACTGAGCCCAGAATAGACATGCTTGGTGAAAACTTTAACCAGCCACACACCTCtcattaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatgtgtgtgtgtgttctggtctacatctgtgtgatgtgatcaatcagttttccagttcagaataaaaaatatgtattgtaattcaacagcaacagttccaacctagactttcTTTCAACAATAATttatacagtaagatgtacagtaggcctgatcatttttcatctgtactgttacttagggttgcactatgaaaaagcctgtgtgtgtgttctgttattcATCTGTGTGAcgtgatcaatcagtttattccagttcggaatgaaaatgatttattgtattttaagagcaacagttccaacctagacagatatgTAAGAGTGTTTTTAAACGGGGGAACACTACAATATCGATTAGGCCTATAAGTTTAGTATAGCTGCTTTTTCATAACATTTTAGTTTAAGTAGGTCTAACGTGATGATATTATAAAAACATAAAGGGCATATTTTTCTCTATTGATCATATTATAAAAACATTGCAACTCACCATGTCACTGAATCAATGGGAGCCCTGAGCTTGTTTCCCGGCAACAAGACAGTCCCATCTAGGAGTGATGGGAGACAGTGACATGTTCCTTATGTCCAGTCTACTCCGTAATTTCGTTTTTGTTGGTGTCATTGCGGAAAACCCTGCTTCGCAGAGATAGGGTGTTGGCAATGGAAGCAATGTTTTCAGTGCTTTTGTGGCTCTCTCAGGATATTCAGCCTTGATTTTAATCCAGGTCGGCAGAGATTAAGTTATCTCAAACATACTTTTAAGGCCActgtcatttacaacatcaaGGAGTTGATCTTCTTCCTGCACAGACATGGACGATTCACCTGGGATATTCACAAATGGGTCGCGGATCCATTCCTTCGCACTTCGTGGGTCTTTGGCGGTTGGGAAGTAACGCTCGAACTCTGTTGACAGCGAAGCTAGGTGATCGTGCACCAGCTGGGAGAAAGACGGACCGGTATCTCCCAAAATCCCTGCTAATGTTTGGAACATGTCAAATATGCCCCTGTCCACTCGCCGTCCCCACAGTTCCAGTTTGGCTTTGAATGCAGCCACTTTATCTGCCAACTTAAAGACAGCTCTCATTCACCCCTGAAGTGACAGATTGAGTTCATTGAGCAGGTTGAATATGTCGCAAAGGTAAGTGAGTTTTGCGACCCATTCCTTGTCATTGAAATGTGCTGCCAGTGGTGACTTTTTTTCTGAAAGAAATCTCTGCAGCGGCTCTCTTAACTCAAACGCTCTGGCAAGCTATCTAGCCATCTGACATCTGTGTATGAGAGAAGGCGTTTGAGCTCTGAGTCCATTTCTTCACAGGATGTGGATAATGGAGACTTTTTACTGGGAGGAGGATGTGAGCAAGAGATCCTAATCTCCCTCAAGAGGCATTGCTGTACATTATCGTACATGACCACTAAGCCTACGCTCAATACTTGCTCAGTCACTACACTGATGAAGCGCTTTTGTTGTTGTCGATCATCGGCCACGATTTAGTGATGGCTGTCAGGAATGACAGACGGGACATACTGGGTCTCATACTGCTTAGCCCACTGATAAGCAGATTGGGAAGAGGGGTTGGGTAacttaaagaagtctcaaggtattgcttgcATGAGGTAGCATACCTCATGataagttgtagaccacactacataccaagagagttctcatctatattattcgtagacatctatttaccacaacaatccgatgctggcactaagaccgcactcaacgaacTGTATAAAGACATAAGTAAACAaggaaatgctcatccagaagcgatGCACCTATTGgcaggggactttaatgcaggcaaacttaaatccatttcacctcatttctaccagcatgtcacatgtgcaaccagaggaaaaaaactctagaccacctttactccacacacagagatgaacacaaagctctccctcgccctccatagggcaaatctgaccatgattctatcctcttgattcctgcttacaagcaaaaacgaaagcaggaagtaccagaagtggtcagatgacatgaatgctacactacaggactgttttgctagcacagactggaatatgtttcaggattcatccaatggcattgagtataccacctcagtcaccggcttcatcaataagtgcatcgacgacgtcgtccctacagtgaccgaacgtacatatcccaaccagaagccatggattacaggtaacatacgcaccgagctaaaggcagGAGCTGCCTTTAGCTCccaaaaaacgtacccatttgaaactgcctatttctcagccccagaaactagaatatgcatataattgtcagattaggatagaaaacactctgaagtttccaaaactgtcaaaatattgtctgtgagtgtaacagaactgatattgcaggcaaaaacctgaggaaaatccaatcaggaagttttgaaacctctctgttcctatgcatgcctatcctccatttaaagggatatcaaccagattcctttttataTGGCTTCTCTAAggtgtcaccagtctttagacatagtttcaggcttttattttgaaaaatgagcgagaaagatcacattgcgtaagtggtaggtgggggctctcagagtgagttttgcgcaacagagtaaagcggccattgtttctccctttcctattgaaaaacctacactcccgtttgatatattatcgaatatatattttaaaaacaacctgaggattgattataaaaaacatttgacatgtttctgtggacattatggatattatttggaatttttgtctgcgttgtcgtgaccgctctttcctatggatttctgaacataatgtgacaaacaaacagagttattttggatataaaatcatctttatggaacaaaaggaacatttgttgtgtaactgggagtctcgtgagtgaaaacacccgaagatcatcaaaggtaaacgattaattcgATTGCTTttttgattttcgtgaccaagctacctgatactaggtgtacttaatgttttgtcatgcgatcgataaacttacacaaacgcttggattgctttcgctgtaaagcataatttcaaaatctgagacgacaagtggattaacaaaaggctaagctgtgttttgcaatattgcacttgtgatttcgtGAATATTTGTCATATTTTTgtcatattatttgactgtggcgctatgctattcagcggtttcTGATGACAATTATAtcgcttaagggatgggtagcgtcaagaagttaacatATAGAGAGtatggtaacatcaaaaggttgtGAACGGAACAATATTTAGGTAATCCAATCAGTTGAAAGTATccgttggtacttaaagaatatgatgtcagatcagttgtcgtctgagacattattgctgatgataggacgacataaattgtgtcttggaaagtctacacattctagttatcatattcacatggaattgttgtgcaatttaaatgtttaaatatgaaactatttgtgaaaagattaaatgtaattttagtttTAAGAATGAGAAAACTGTTTACATATGTAGAATATGctccaggagacaggccagtacatcaggagacatggaggaggccgtaggagggcaacaacccagcagcaggaccgctacctccgcctttgtgcaaggaggagcaggaggagcactgccagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793486 lncRNA upstream 5485 32120760 ~ 32120964 (+) True G697191
TU793483 lncRNA upstream 8433 32117785 ~ 32118016 (+) True G697188
TU793469 lncRNA upstream 34742 32091450 ~ 32091707 (+) True G697174
TU793460 lncRNA upstream 42706 32083527 ~ 32083743 (+) True G697165
TU793459 lncRNA upstream 43037 32083191 ~ 32083412 (+) True G697164
TU793497 lncRNA downstream 3521 32135268 ~ 32141382 (+) False LOC118965508
TU793498 lncRNA downstream 3521 32135268 ~ 32141382 (+) True LOC118965508
TU793504 lncRNA downstream 15819 32147566 ~ 32147966 (+) True G697204
TU793521 lncRNA downstream 35364 32167111 ~ 32167338 (+) True G697214
TU793522 lncRNA downstream 35708 32167455 ~ 32167671 (+) True G697215
XM_021612328.2 mRNA upstream 15570 31951092 ~ 32110879 (+) False LOC110529794
XM_021612329.2 mRNA upstream 15570 32077132 ~ 32110879 (+) True LOC110529794
XM_036985288.1 mRNA upstream 552876 31550399 ~ 31573573 (+) True LOC110529230
XM_036985286.1 mRNA upstream 723885 31394194 ~ 31402564 (+) False stxbp6l
XR_005052855.1 mRNA downstream 3449 32135196 ~ 32141382 (+) False LOC118965508
XM_021612333.2 mRNA downstream 20954 32152701 ~ 32156250 (+) True LOC110529798
XM_021612334.2 mRNA downstream 31574 32163321 ~ 32166068 (+) False LOC110529799
XM_021612335.2 mRNA downstream 31593 32163340 ~ 32166068 (+) True LOC110529799
XM_021612338.2 mRNA downstream 40465 32172212 ~ 32193704 (+) True LOC110529801
TU790056 other upstream 2333702 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3188176 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3188176 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3420697 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 3568076 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 1995846 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 3323101 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3481417 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3772302 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4568691 36700438 ~ 36700739 (+) True G702415

Expression Profile