RNA id: TU793504


Basic Information

Item Value
RNA id TU793504
length 401
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G697204
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32147566 ~ 32147966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAATAACACAAATAGGCTAATGAACATGAATCATAAATTCTGCCATAAGGAGGAAGTGATGGAGGTTAATGAAAATACACAAGTGGCAACAACAGACCTTTCACAGGCTAAGCTCCATCTGCTCCCCTAACAGAGAGGTACAGACAGCTGTCATGACTTTAcattcattaatctgatgactgttacttatttaatccactaactatgtttaattgttacccgattaaattaatcatgtaacaattaactcattaggatttggggcaccacggaagaagtTGTTTagagagttaccatctcccgaattaaactctataAGGTCTTTACCTATTTCATCTATAATCATTACCTATAATTATATCCTAATTCGTAACCtcatgcatctgcaaaaacccggAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793497 lncRNA upstream 6184 32135268 ~ 32141382 (+) False LOC118965508
TU793498 lncRNA upstream 6184 32135268 ~ 32141382 (+) True LOC118965508
TU793493 lncRNA upstream 15819 32126449 ~ 32131747 (+) True G697196
TU793486 lncRNA upstream 26602 32120760 ~ 32120964 (+) True G697191
TU793483 lncRNA upstream 29550 32117785 ~ 32118016 (+) True G697188
TU793521 lncRNA downstream 19145 32167111 ~ 32167338 (+) True G697214
TU793522 lncRNA downstream 19489 32167455 ~ 32167671 (+) True G697215
TU793524 lncRNA downstream 20614 32168580 ~ 32168796 (+) True G697217
TU793530 lncRNA downstream 66483 32214449 ~ 32217565 (+) True G697221
TU793551 lncRNA downstream 76723 32224689 ~ 32225047 (+) True G697242
XR_005052855.1 mRNA upstream 6184 32135196 ~ 32141382 (+) False LOC118965508
XM_021612328.2 mRNA upstream 36687 31951092 ~ 32110879 (+) False LOC110529794
XM_021612329.2 mRNA upstream 36687 32077132 ~ 32110879 (+) True LOC110529794
XM_036985288.1 mRNA upstream 573993 31550399 ~ 31573573 (+) True LOC110529230
XM_036985286.1 mRNA upstream 745002 31394194 ~ 31402564 (+) False stxbp6l
XM_021612333.2 mRNA downstream 4735 32152701 ~ 32156250 (+) True LOC110529798
XM_021612334.2 mRNA downstream 15355 32163321 ~ 32166068 (+) False LOC110529799
XM_021612335.2 mRNA downstream 15374 32163340 ~ 32166068 (+) True LOC110529799
XM_021612338.2 mRNA downstream 24246 32172212 ~ 32193704 (+) True LOC110529801
XM_021612340.2 mRNA downstream 46241 32194207 ~ 32214087 (+) False LOC110529803
TU790056 other upstream 2354819 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3209293 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3209293 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3441814 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 3589193 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 1979627 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 3306882 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3465198 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3756083 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4552472 36700438 ~ 36700739 (+) True G702415

Expression Profile