RNA id: TU793530


Basic Information

Item Value
RNA id TU793530
length 1618
lncRNA type read_through
GC content 0.45
exon number 3
gene id G697221
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32214449 ~ 32217565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTTCATATGATCAATTTCTTTATTATAATCCATCACCCGGAGGCCTGAAAGAAAAAAACAGTAGCTTTAACTCAACTCCTACTTAGTTTTCCAGGCTTTCTCACAATTTAATTTTGTTCCAATAGCTGAGTGATGAACGAggattggaaggatggcatcgcAAGACTATGCAACCCAAAAAGAAAACACAGCACTGACCAATCCTAATACAGAACTTAACCACAATATTGTCAACAATGCCGGTTCATGGTTTTTTTTGGTCACATTTACACAATGGTCAAGTTGTCTTTTGATAATTGTTACACAATTGTCAGCATTTGAGGTTGATCACAGGTTCTATTGTCTAGGCGTCCATTGGCAGACATGAGGCTTTAGTACACACATGCATTTGTCATCGGGATCAAAGTGAGGGTTGACATCAGTTTCATAATGTGCAAACAGTCAACTAAAATCAGCACTATCAAATCTAATATTTGTTAATAAAAGCAAATGGAAACTGGGTTTAATGACAATATTCAGAAAGATAATTTCCTCAAATCAATTTTCACACCCATTCTCACTAAAACTTAAATAATATTTCATCCTAAACACAAGCatcactcaccccccccccccccaagctctCACGCAACAGCGGTTTTATCATACACAGCTGTATCACTGACAAAGACATTAGCATCTGTCCATGCTCTCCACTTTGGGTCATTAAGTTACTCCCCCCACCACAACCCCTACTCTTCAGGCAGTTGTAGTCCAATGTATACACATGTATCGTGCAGAATCTTATGCATGTACATTATATGCATTATAAGCACTATAGCCTGTGAGCGAGTGCAttctcaaatgttgtgtacaaTATGTGTGAGGGGCGGACATAATTACAGGCTTGTCTAGCTCGACACAATTCTTGCTGGTGGGAAGCTGATACACAGGTAGTTGCCTATAAGGAGAGGAGTGTAGGGGACACTGGGGATTGGGAGAGATGTTGGGTGCACAAGGCAGAAAGGAGGGACGGGGGACTCAGGAGTTATCAGAGGGCACATGCTCCTCGAAGCCCTCGCTCTCCCTTACTAGCGCCCTTTCGAGGATGACGCGGCCTTCCTTGTAGCGCTGACTGTCTTCTGTGGCAAACTCGTAGATCCAGCCCAGCTTGCTGTTGCAGTTCTTGCAGCTGACGTCTCGCACCATGTGTCTGCCCGTCAGCATCACACGGTCCTGCACCTCGCTGTACTGCAGGTTCACCACCTTGTTGAAGAGGAAGGCTCGGCCCGTGGCGCCAGTGAAGCGCGTGGAGATGAGCTCAGAGCGGTTGGTCAGGATGGTGTCACAGTTGGCGCAGGAGAAGAGGCGGGTCCCGCCGATGTGGTCCAGGAAGATCCGGCCCATAGTGCTGTTGTAAGCAGAGACCGACCTTGAATCTGTAATTTTCAGAGTTCTGTCGACACGAATGTTAATAACCTGTTTTCTTGACCACTTCTATAGTCTTTATCAACCTCGAATCcagttttgttgttgtattttcacCTTCTTTTCGTCCTTCTCGTCGATTCTGTAGCTAGAAGTGGCGTCAGCTTTGTTGTTCTCTCACAGCTGTTCCGCAGACTGTATCAACATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793524 lncRNA upstream 45653 32168580 ~ 32168796 (+) True G697217
TU793522 lncRNA upstream 46778 32167455 ~ 32167671 (+) True G697215
TU793521 lncRNA upstream 47111 32167111 ~ 32167338 (+) True G697214
TU793504 lncRNA upstream 66483 32147566 ~ 32147966 (+) True G697204
TU793497 lncRNA upstream 73067 32135268 ~ 32141382 (+) False LOC118965508
TU793551 lncRNA downstream 7124 32224689 ~ 32225047 (+) True G697242
TU793572 lncRNA downstream 66717 32284282 ~ 32284505 (+) True G697260
TU793584 lncRNA downstream 86331 32303896 ~ 32304102 (+) True G697270
TU793594 lncRNA downstream 103875 32321440 ~ 32322745 (+) True G697280
TU793595 lncRNA downstream 105201 32322766 ~ 32323116 (+) True G697281
XM_021612340.2 mRNA upstream 362 32194207 ~ 32214087 (+) False LOC110529803
XM_021612341.2 mRNA upstream 362 32194224 ~ 32214087 (+) True LOC110529803
XM_021612338.2 mRNA upstream 20745 32172212 ~ 32193704 (+) True LOC110529801
XM_021612334.2 mRNA upstream 48381 32163321 ~ 32166068 (+) False LOC110529799
XM_021612335.2 mRNA upstream 48381 32163340 ~ 32166068 (+) True LOC110529799
XM_021612336.2 mRNA downstream 7678 32225243 ~ 32255838 (+) False LOC110529800
XM_036985289.1 mRNA downstream 7678 32225243 ~ 32255838 (+) True LOC110529800
XM_021612339.2 mRNA downstream 38753 32256318 ~ 32268368 (+) True LOC110529802
XM_021612357.2 mRNA downstream 69599 32287164 ~ 32289011 (+) False grcc10
XM_021612358.2 mRNA downstream 69599 32287164 ~ 32289011 (+) True grcc10
TU790056 other upstream 2421702 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3276176 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3276176 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3508697 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 3656076 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 1910028 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 3237283 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3395599 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3686484 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4482873 36700438 ~ 36700739 (+) True G702415

Expression Profile