RNA id: TU793594


Basic Information

Item Value
RNA id TU793594
length 1306
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G697280
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32321440 ~ 32322745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACCATGGAACCGAATTTCATAATGTGAAAACTCCATTAGCCTGTCTTAGTTCTAGGCAATTTTCCTGGTTGTTTTATGTGTCGGTATTAGATTTGAGTGACCTCGTGTATACATTGTGTCTTTCATTGTGATTGAATGTTTGGTGTATTAAAGGCGCAATCCATACCTTTTTCTCTACCTCGTGGCAATGAAACAAACTACAACTGTCCTGAAAAATGTACGCTAATAACTCACAGAAAAACTCAGGGCAACACTTTAGGGGGAAAAAACTCAACATATAGATTCCACCTTTATGAGCTAGAAATGCTGTTGTAGTGTGGTGTTTTTTCATCCATTTGTATacatttattgtgaaacaaactaaCAGGAGCTATAGTATATACCCACCCACATAAAGAGGGCAACACTCTTTGGCCAAACACAATGGGAAAAGTATCAAATGTACAGTGAACAGAGAACCACTCTTGTTGacgaaaaaaaaaaatacaatttcaaatcctacgcattttgccatgtcttaaatttgtggcacctgaccaaacGACTTAACAGTAGTAgctttgttgatagtgttgttaagaaggcagagcagcactttattacgGACATACTTCTCCCCAACTTAggtactgttgtatcaatatgttttgactatgacagtttacaatccagggttactccaagcagtttagtcatctcaacttgctcaatttccacattatttattacaagattcagttgaggtttaggttttagtgaatgatttgtcccaaatacactGCCTTTAGAtgtagaaatatttagggctaacttattccttgccacccactctgaaactaactgcagctctttgttaagtgttgcagtcatttcagtcactgtagtggctgacgtgtatagtgttgagtcatctgcatacatagacactggCTTTACTTAAAGTCAGTAGCATCAActttagtaaagattgaaaaaagcaaggggcctagaCAGATACCCTGGGTAATTCCTGATTcaacctggattatgtttgagaggcttccattaaagaacaccctctgtgttctgttagacaagtaacacTTTATCCACATTATACCAGGGGGTGTTAAGCCATAACgcaagtttttccagcagcagactatgatcgataatgtaaaaatttgcactgaagtctaacaagacagcccccatcACTTTATCATCAGTTTCTATCAGCCAATCatgtcatttgtgtaagtgctttgcttcttggcattctctcaaccagcttcatgaggaatgctttcccaacagtcttgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793584 lncRNA upstream 17338 32303896 ~ 32304102 (+) True G697270
TU793572 lncRNA upstream 36935 32284282 ~ 32284505 (+) True G697260
TU793551 lncRNA upstream 96393 32224689 ~ 32225047 (+) True G697242
TU793530 lncRNA upstream 103875 32214449 ~ 32217565 (+) True G697221
TU793524 lncRNA upstream 152644 32168580 ~ 32168796 (+) True G697217
TU793595 lncRNA downstream 21 32322766 ~ 32323116 (+) True G697281
TU793596 lncRNA downstream 600 32323345 ~ 32323708 (+) True G697282
TU793598 lncRNA downstream 2129 32324874 ~ 32325083 (+) True G697284
TU793600 lncRNA downstream 3968 32326713 ~ 32327265 (+) True G697286
TU793601 lncRNA downstream 5180 32327925 ~ 32328172 (+) True G697287
XM_021612357.2 mRNA upstream 32429 32287164 ~ 32289011 (+) False grcc10
XM_021612358.2 mRNA upstream 32429 32287164 ~ 32289011 (+) True grcc10
XM_021612339.2 mRNA upstream 53072 32256318 ~ 32268368 (+) True LOC110529802
XM_021612336.2 mRNA upstream 65602 32225243 ~ 32255838 (+) False LOC110529800
XM_036986867.1 mRNA downstream 172684 32495429 ~ 32503490 (+) True LOC110529813
XM_036985298.1 mRNA downstream 180393 32503138 ~ 32516734 (+) True LOC110529231
XM_021612364.2 mRNA downstream 217513 32540258 ~ 32544145 (+) True LOC110529815
XM_021612377.2 mRNA downstream 359687 32682432 ~ 32686606 (+) True rps7
XR_005053033.1 mRNA downstream 360954 32683699 ~ 32683923 (+) True LOC118965652
TU790056 other upstream 2528693 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3383167 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3383167 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3615688 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 3763067 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 1804848 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 3132103 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3290419 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3581304 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4377693 36700438 ~ 36700739 (+) True G702415

Expression Profile