RNA id: TU794040



Basic Information


Item Value
RNA id TU794040
length 210
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G697699
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32403428 ~ 32403637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctaccagcgttatTCCCATGCTCccgttttctagttttcccagttttgaccattttgcctgccctgaccctgagcctgcctgccgttctgtaccttgtcacaccactctggattacagacctctgcctgccctgaccctgagcctgtctcccGTTCTGTACCTTtgggactctgctctggattactgacctctgcttgCCCTTGACCTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU794028 lncRNA downstream 11641 32391442 ~ 32391787 (-) True G697687
TU794024 lncRNA downstream 18824 32384353 ~ 32384604 (-) True G697683
TU794013 lncRNA downstream 38211 32364920 ~ 32365217 (-) True G697672
TU794012 lncRNA downstream 38739 32364485 ~ 32364689 (-) True G697671
TU793991 lncRNA downstream 73226 32328818 ~ 32330202 (-) True G697651
TU794047 lncRNA upstream 8726 32412363 ~ 32413225 (-) True G697706
TU794050 lncRNA upstream 11195 32414832 ~ 32415065 (-) True G697709
TU794076 lncRNA upstream 46306 32449943 ~ 32450206 (-) True G697734
TU794079 lncRNA upstream 49076 32452713 ~ 32452948 (-) True G697737
TU794084 lncRNA upstream 56489 32460126 ~ 32460361 (-) True G697742
XR_005052856.1 mRNA downstream 81288 32306142 ~ 32322140 (-) False LOC110529812
XR_005052857.1 mRNA downstream 81288 32306142 ~ 32322140 (-) False LOC110529812
XM_036985297.1 mRNA downstream 81288 32318440 ~ 32322140 (-) True LOC110529812
XM_021612349.2 mRNA downstream 102135 32289064 ~ 32301293 (-) False LOC110529806
XR_005053020.1 mRNA upstream 13835 32417472 ~ 32421085 (-) True LOC118965610
XM_021614360.2 mRNA upstream 159494 32563131 ~ 32569877 (-) True LOC110531086
XM_036985337.1 mRNA upstream 166379 32570016 ~ 32589797 (-) False cep43
XM_036985335.1 mRNA upstream 166379 32570016 ~ 32589808 (-) False cep43
XM_036985336.1 mRNA upstream 166379 32570016 ~ 32589809 (-) False cep43
TU793919 other downstream 185879 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 185879 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 723693 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 925401 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 1548021 30855107 ~ 30855407 (-) True G696073
TU794118 other upstream 95162 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 585608 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1539385 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1619654 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 3179361 35582998 ~ 35589877 (-) True G701454

Expression Profile