RNA id: TU794079


Basic Information

Item Value
RNA id TU794079
length 236
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G697737
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32452713 ~ 32452948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctacatggagtaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacagagggtatataacaaagtattgagataaacttttgttattgaccaaatacttattttccaccataatttgcaaatagattcatt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU794076 lncRNA downstream 2507 32449943 ~ 32450206 (-) True G697734
TU794050 lncRNA downstream 37648 32414832 ~ 32415065 (-) True G697709
TU794047 lncRNA downstream 39488 32412363 ~ 32413225 (-) True G697706
TU794040 lncRNA downstream 49076 32403428 ~ 32403637 (-) True G697699
TU794028 lncRNA downstream 60926 32391442 ~ 32391787 (-) True G697687
TU794084 lncRNA upstream 7178 32460126 ~ 32460361 (-) True G697742
TU794093 lncRNA upstream 16572 32469520 ~ 32469813 (-) True G697749
TU794095 lncRNA upstream 18157 32471105 ~ 32471304 (-) True G697751
TU794100 lncRNA upstream 23818 32476766 ~ 32477006 (-) True G697756
TU794101 lncRNA upstream 24199 32477147 ~ 32477424 (-) True G697757
XR_005053020.1 mRNA downstream 31628 32417472 ~ 32421085 (-) True LOC118965610
XR_005052856.1 mRNA downstream 130573 32306142 ~ 32322140 (-) False LOC110529812
XR_005052857.1 mRNA downstream 130573 32306142 ~ 32322140 (-) False LOC110529812
XM_036985297.1 mRNA downstream 130573 32318440 ~ 32322140 (-) True LOC110529812
XM_036985293.1 mRNA downstream 151420 32289064 ~ 32301293 (-) True LOC110529806
XM_021614360.2 mRNA upstream 110183 32563131 ~ 32569877 (-) True LOC110531086
XM_036985337.1 mRNA upstream 117068 32570016 ~ 32589797 (-) False cep43
XM_036985335.1 mRNA upstream 117068 32570016 ~ 32589808 (-) False cep43
XM_036985336.1 mRNA upstream 117068 32570016 ~ 32589809 (-) False cep43
XM_036985332.1 mRNA upstream 117068 32570016 ~ 32589810 (-) False cep43
TU793919 other downstream 235164 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 235164 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 772978 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 974686 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 1597306 30855107 ~ 30855407 (-) True G696073
TU794118 other upstream 45851 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 536297 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1490074 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1570343 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 3130050 35582998 ~ 35589877 (-) True G701454

Expression Profile