Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00035612 |
| length | 4689 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 17 |
| gene id | XLOC_018073 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 24149794 ~ 24183382 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048514 | blood vessel morphogenesis | biological_process |
| GO:0007254 | JNK cascade | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004709 | MAP kinase kinase kinase activity | molecular_function |
| GO:0000287 | magnesium ion binding | molecular_function |
| id | description |
|---|---|
| ko04010 | MAPK signaling pathway |
| ko04013 | MAPK signaling pathway - fly |
| ko04310 | Wnt signaling pathway |
| ko04064 | NF-kappa B signaling pathway |
| ko04668 | TNF signaling pathway |
| ko04152 | AMPK signaling pathway |
| ko04140 | Autophagy - animal |
| ko04214 | Apoptosis - fly |
| ko04520 | Adherens junction |
| ko04613 | Neutrophil extracellular trap formation |
| ko04620 | Toll-like receptor signaling pathway |
| ko04624 | Toll and Imd signaling pathway |
| ko04621 | NOD-like receptor signaling pathway |
| ko04622 | RIG-I-like receptor signaling pathway |
| ko04660 | T cell receptor signaling pathway |
| ko04657 | IL-17 signaling pathway |
| ko04380 | Osteoclast differentiation |
| ko05170 | Human immunodeficiency virus 1 infection |
| ko05161 | Hepatitis B |
| ko05171 | Coronavirus disease - COVID-19 |
| ko05162 | Measles |
| ko05168 | Herpes simplex virus 1 infection |
| ko05169 | Epstein-Barr virus infection |
| ko05130 | Pathogenic Escherichia coli infection |
| ko05132 | Salmonella infection |
| ko05131 | Shigellosis |
| ko05135 | Yersinia infection |
| ko05145 | Toxoplasmosis |
| ko05140 | Leishmaniasis |
| ko05417 | Lipid and atherosclerosis |
| ko05418 | Fluid shear stress and atherosclerosis |
| ko01001 | Protein kinases |
| id | description |
|---|---|
| ZDB-GENE-041001-135 | Predicted to enable MAP kinase kinase kinase activity. Acts upstream of or within blood vessel morphogenesis. Human ortholog(s) of this gene implicated in frontometaphyseal dysplasia 2 and prostate cancer. Orthologous to human MAP3K7 (mitogen-activated protein kinase kinase kinase 7). |
| ensembl_id | ENSDART00000171184 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00035610 | lncRNA | downstream | 27037 | 24064689 ~ 24122757 (-) | False | XLOC_018072 |
| TCONS_00036836 | lncRNA | downstream | 203696 | 23908594 ~ 23946098 (-) | True | XLOC_018071 |
| TCONS_00035600 | lncRNA | downstream | 661650 | 23480453 ~ 23488144 (-) | False | XLOC_018066 |
| TCONS_00036473 | lncRNA | downstream | 953136 | 23194788 ~ 23196658 (-) | True | XLOC_018060 |
| TCONS_00036472 | lncRNA | downstream | 978435 | 23169183 ~ 23171359 (-) | True | XLOC_018059 |
| TCONS_00036474 | lncRNA | upstream | 5288 | 24187977 ~ 24188631 (-) | True | XLOC_018074 |
| TCONS_00036837 | lncRNA | upstream | 52237 | 24234926 ~ 24272463 (-) | True | XLOC_018075 |
| TCONS_00036475 | lncRNA | upstream | 265318 | 24448007 ~ 24450177 (-) | False | XLOC_018077 |
| TCONS_00036838 | lncRNA | upstream | 265318 | 24448007 ~ 24454929 (-) | False | XLOC_018077 |
| TCONS_00035620 | lncRNA | upstream | 266948 | 24449637 ~ 24454929 (-) | True | XLOC_018077 |
| TCONS_00035608 | mRNA | downstream | 26913 | 23972948 ~ 24122881 (-) | False | XLOC_018072 |
| TCONS_00035609 | mRNA | downstream | 127236 | 23974626 ~ 24022558 (-) | False | XLOC_018072 |
| TCONS_00035607 | mRNA | downstream | 203498 | 23877299 ~ 23946296 (-) | False | XLOC_018071 |
| TCONS_00035606 | mRNA | downstream | 273503 | 23860858 ~ 23876291 (-) | True | XLOC_018070 |
| TCONS_00035605 | mRNA | downstream | 297620 | 23847380 ~ 23852174 (-) | True | XLOC_018069 |
| TCONS_00035619 | mRNA | upstream | 252982 | 24435671 ~ 24443680 (-) | True | XLOC_018076 |
| TCONS_00035621 | mRNA | upstream | 634429 | 24817118 ~ 24963092 (-) | False | XLOC_018079 |
| TCONS_00035622 | mRNA | upstream | 635147 | 24817836 ~ 24963038 (-) | True | XLOC_018079 |
| TCONS_00035623 | mRNA | upstream | 1176375 | 25359064 ~ 25436389 (-) | False | XLOC_018081 |
| TCONS_00035624 | mRNA | upstream | 1176378 | 25359067 ~ 25369767 (-) | False | XLOC_018081 |
| TCONS_00035611 | other | downstream | 27037 | 24083139 ~ 24122757 (-) | True | XLOC_018072 |
| TCONS_00035595 | other | downstream | 724140 | 23423846 ~ 23425654 (-) | True | XLOC_018063 |
| TCONS_00035593 | other | downstream | 901155 | 23245639 ~ 23248639 (-) | True | XLOC_018062 |
| TCONS_00035590 | other | downstream | 923418 | 23223900 ~ 23226376 (-) | True | XLOC_018061 |
| TCONS_00035586 | other | downstream | 986537 | 23161279 ~ 23163257 (-) | False | XLOC_018059 |
| TCONS_00035626 | other | upstream | 1185821 | 25368510 ~ 25369880 (-) | False | XLOC_018081 |
| TCONS_00035635 | other | upstream | 1354891 | 25537580 ~ 25538417 (-) | False | XLOC_018086 |
| TCONS_00035636 | other | upstream | 1355666 | 25538355 ~ 25540754 (-) | True | XLOC_018086 |
| TCONS_00035639 | other | upstream | 1366736 | 25549425 ~ 25550816 (-) | True | XLOC_018087 |
| TCONS_00035648 | other | upstream | 1459991 | 25642680 ~ 25644837 (-) | True | XLOC_018090 |
