RNA id: TU794157


Basic Information

Item Value
RNA id TU794157
length 303
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G697808
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32532864 ~ 32533166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCATGGAGAAATATTTCCAGATGAGATGTAATCGTCTCACTCACATTTACCCATGTGGAATGAGATACGGCAGCAGATTTCTGCACCGCACAATATGTCTTTGGAACACTTGGAATTCCTGGAAGGGCCTCCTTTAGAAAGCCCTTGAAGAAGTATCTGCCACAATGAATGTCTCGGTTGTTTCAACTTCTGGTTAAAAATCAGCGTGAATCTAGTAAAAAAAGCACCAACACATTCAATAGATCTCATCCTTTACCAGAGTGGGACTGCTGTACGATGACCCTCAATCATCCATTTAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU794149 lncRNA upstream 3395 32529136 ~ 32529469 (+) True G697800
TU794143 lncRNA upstream 7088 32525555 ~ 32525776 (+) True G697794
TU794137 lncRNA upstream 9012 32523629 ~ 32523852 (+) True G697788
TU794131 lncRNA upstream 12712 32519896 ~ 32520152 (+) True G697782
TU793616 lncRNA upstream 14717 32517225 ~ 32518147 (+) True G697302
TU794158 lncRNA downstream 291 32533457 ~ 32533963 (+) True G697809
TU794159 lncRNA downstream 844 32534010 ~ 32534223 (+) True G697810
TU794162 lncRNA downstream 4176 32537342 ~ 32537613 (+) True G697813
TU794165 lncRNA downstream 11978 32545144 ~ 32545508 (+) True G697816
TU794176 lncRNA downstream 14512 32547678 ~ 32547880 (+) True G697825
XM_036985298.1 mRNA upstream 16130 32503138 ~ 32516734 (+) True LOC110529231
XM_036986867.1 mRNA upstream 29374 32495429 ~ 32503490 (+) True LOC110529813
XM_021612357.2 mRNA upstream 243853 32287164 ~ 32289011 (+) False grcc10
XM_021612358.2 mRNA upstream 243853 32287164 ~ 32289011 (+) True grcc10
XM_021612339.2 mRNA upstream 264496 32256318 ~ 32268368 (+) True LOC110529802
XM_021612364.2 mRNA downstream 7092 32540258 ~ 32544145 (+) True LOC110529815
XM_021612377.2 mRNA downstream 149266 32682432 ~ 32686606 (+) True rps7
XR_005053033.1 mRNA downstream 150533 32683699 ~ 32683923 (+) True LOC118965652
XR_005053032.1 mRNA downstream 151539 32684705 ~ 32684929 (+) True LOC118965651
XR_005053030.1 mRNA downstream 152064 32685230 ~ 32685454 (+) True LOC118965649
TU790056 other upstream 2740117 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3594591 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3594591 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3827112 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 3974491 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 1594427 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 2921682 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3079998 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3370883 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4167272 36700438 ~ 36700739 (+) True G702415

Expression Profile