RNA id: TU794198


Basic Information

Item Value
RNA id TU794198
length 200
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G697847
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32563043 ~ 32563242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtatcggaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactacaacaattggataccacgaaattggggagaaaaagggttcaaattcaaaaaaagaaaaaaagaaaatcagAGACAAGGTTTGAGATATTGCGGTCCATCAATGAATCCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU794176 lncRNA upstream 15163 32547678 ~ 32547880 (+) True G697825
TU794165 lncRNA upstream 17535 32545144 ~ 32545508 (+) True G697816
TU794162 lncRNA upstream 25430 32537342 ~ 32537613 (+) True G697813
TU794159 lncRNA upstream 28820 32534010 ~ 32534223 (+) True G697810
TU794158 lncRNA upstream 29080 32533457 ~ 32533963 (+) True G697809
TU794196 lncRNA downstream 6773 32570015 ~ 32571972 (+) True G697845
TU794245 lncRNA downstream 101794 32665036 ~ 32665259 (+) True G697884
TU794250 lncRNA downstream 105595 32668837 ~ 32669039 (+) True G697888
TU794448 lncRNA downstream 221436 32784678 ~ 32784882 (+) True G698066
TU794457 lncRNA downstream 226008 32789250 ~ 32789520 (+) True G698075
XM_021612364.2 mRNA upstream 18898 32540258 ~ 32544145 (+) True LOC110529815
XM_036985298.1 mRNA upstream 46309 32503138 ~ 32516734 (+) True LOC110529231
XM_036986867.1 mRNA upstream 59553 32495429 ~ 32503490 (+) True LOC110529813
XM_021612357.2 mRNA upstream 274032 32287164 ~ 32289011 (+) False grcc10
XM_021612377.2 mRNA downstream 119190 32682432 ~ 32686606 (+) True rps7
XR_005053033.1 mRNA downstream 120457 32683699 ~ 32683923 (+) True LOC118965652
XR_005053032.1 mRNA downstream 121463 32684705 ~ 32684929 (+) True LOC118965651
XR_005053030.1 mRNA downstream 121988 32685230 ~ 32685454 (+) True LOC118965649
XR_005053031.1 mRNA downstream 122925 32686167 ~ 32686391 (+) True LOC118965650
TU790056 other upstream 2770296 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3624770 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3624770 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3857291 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 4004670 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 1564351 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 2891606 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3049922 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3340807 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4137196 36700438 ~ 36700739 (+) True G702415

Expression Profile