RNA id: TU794745



Basic Information


Item Value
RNA id TU794745
length 817
RNA type TUCP
GC content 0.44
exon number 1
gene id G698356
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32989245 ~ 32990061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtttatcaattttaaaggcaaattgatcattatgaaaccattttgcaattatgttagcacagctgaaaacatttgggctgattaaagaagcaataaaactggcctacttttgattagttgagtatctggagcatcagcatttgtgggttcgattacagaatcaaaatggccagaaacaaataactttcttgagaaatgaaggctattccatgcgagaaattgccaagaaactgaagatctcgtacaacgctgtgtactactcccttcacagaaaggcgcaaactggctctatccagaatagagagaggagtgggagggcccggagcacaactgagcaagaagacaagtacattagagtgtctagtttgagaaacagacgcctcacaagtcctcaactggcagcttcattaaaaagtaCCCGCAaaccaccagtctcaacgtcaacagtgaagaggcgactcctgtatgctggccttctagacagactTGCAAAGAAAAAAccttctcagactggccaataaaaagaaaagattaagatgggcaaaagaacacagacactggacagaggaactctgcctagaaggccagcatcccggagtcgccttttcactgttgacgttgagactggtgttttgcgggtactatttaatgaagctgccagttgaggacttgtgtggcatctgtttctcaaactagtcactctaatgtacttgtcctcttgctcagctgtgcaccatggtctcccactcctctttctattctggttaggccagtttgcgctgttctattAAGGGAGCAGTacacggtagtgtgtat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU794741 lncRNA downstream 9477 32977804 ~ 32979768 (-) True LOC110529821
TU794742 lncRNA downstream 11537 32977582 ~ 32977708 (-) True G698354
TU794707 lncRNA downstream 19316 32969709 ~ 32969929 (-) True G698321
TU794700 lncRNA downstream 23521 32965522 ~ 32965724 (-) True G698314
TU794684 lncRNA downstream 33979 32954981 ~ 32955266 (-) True G698298
TU794757 lncRNA upstream 13781 33003842 ~ 33004059 (-) True G698368
TU794762 lncRNA upstream 16355 33006416 ~ 33006645 (-) True G698373
TU794866 lncRNA upstream 98335 33088396 ~ 33088608 (-) True G698474
TU795062 lncRNA upstream 224668 33214729 ~ 33214969 (-) True G698663
TU795130 lncRNA upstream 276810 33266871 ~ 33267149 (-) True G698729
XM_021612379.2 mRNA downstream 2573 32977796 ~ 32986672 (-) False LOC110529821
XM_021612375.2 mRNA downstream 306719 32670745 ~ 32682526 (-) True LOC110529818
XM_021612374.2 mRNA downstream 306796 32670745 ~ 32682449 (-) False LOC110529818
XM_036985300.1 mRNA downstream 350396 32590298 ~ 32638849 (-) True myt1la
XM_036985305.1 mRNA downstream 350994 32590298 ~ 32638251 (-) False myt1la
LOC110529232 mRNA upstream 400916 33390977 ~ 33405852 (-) True LOC110529232
XR_005052863.1 mRNA upstream 419742 33409803 ~ 33410951 (-) False LOC110529824
XR_005052861.1 mRNA upstream 419742 33409803 ~ 33411406 (-) False LOC110529824
XR_005052860.1 mRNA upstream 419742 33409803 ~ 33411530 (-) False LOC110529824
XR_005052862.1 mRNA upstream 419742 33409803 ~ 33413009 (-) False LOC110529824
TU794118 other downstream 489835 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 771696 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 771696 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 1309510 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 1511218 31477354 ~ 31478027 (-) True G696499
TU795919 other upstream 952961 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1033230 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 2592937 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 2651294 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 2651294 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile