RNA id: TU794983



Basic Information


Item Value
RNA id TU794983
length 313
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G698586
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33195260 ~ 33196043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCGCAGAGTGCTGATCGGGTTTTTTTTGGAAAGAAGAGAGCTAAATGAAAACAGGCACAATTGGAAAGAGGCTGTGTGCACTACAGTCACATCGGCCGAAACTAAAGACTGAAGCATCACCCAGGTGGGTCAGCTACTTACGGTGGAGAGGCTACTATGGAGGAACTGGGAACGTCGGACAAAGCGATGGGCCCTGATGAAGATCTCCTGGCTTGTCTGACAGACGGACTTTCTCCCTGGCTGTACCATACCATCGATCCGCCCTCCTCTCAAGCCATACtgaattttacaaactgactcaACTCCATTCCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU794888 lncRNA upstream 92019 33102953 ~ 33103241 (+) True G698496
TU794885 lncRNA upstream 94974 33099949 ~ 33100286 (+) True G698493
TU794868 lncRNA upstream 103905 33090183 ~ 33091355 (+) True G698476
TU794860 lncRNA upstream 109363 33085658 ~ 33085897 (+) True G698468
TU794719 lncRNA upstream 213427 32977883 ~ 32981833 (+) False G698333
TU795088 lncRNA downstream 42268 33238311 ~ 33238556 (+) True G698688
TU795128 lncRNA downstream 69448 33265491 ~ 33265706 (+) True G698727
TU795132 lncRNA downstream 72686 33268729 ~ 33269673 (+) True G698731
TU795206 lncRNA downstream 172900 33368943 ~ 33427011 (+) True G698804
TU795239 lncRNA downstream 213785 33409828 ~ 33410736 (+) True G698833
XM_021612378.2 mRNA upstream 498590 32691529 ~ 32696670 (+) True allc
XR_005053031.1 mRNA upstream 508869 32686167 ~ 32686391 (+) True LOC118965650
XR_005053030.1 mRNA upstream 509806 32685230 ~ 32685454 (+) True LOC118965649
XR_005053032.1 mRNA upstream 510331 32684705 ~ 32684929 (+) True LOC118965651
XR_005053033.1 mRNA upstream 511337 32683699 ~ 32683923 (+) True LOC118965652
XM_021612381.2 mRNA downstream 215675 33411718 ~ 33424020 (+) False LOC110529823
XR_005052859.1 mRNA downstream 215675 33411718 ~ 33424020 (+) True LOC110529823
XM_021612385.2 mRNA downstream 240245 33436288 ~ 33445632 (+) True LOC110529826
XM_036985340.1 mRNA downstream 250378 33446421 ~ 33453220 (+) True LOC118965509
XM_021612389.2 mRNA downstream 284166 33480209 ~ 33484404 (+) True sf3b6
TU790056 other upstream 3402513 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 4256987 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 4256987 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 4489508 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 4636887 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 931550 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 2258805 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 2417121 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 2708006 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 3504395 36700438 ~ 36700739 (+) True G702415

Expression Profile