RNA id: TCONS_00036837


Basic Information

Item Value
RNA id TCONS_00036837
length 880
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_018075
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 24234926 ~ 24272463 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGACTCCATCATACAGCAAACAATGACATCAGACTCAAACAAACGTCAAGCTTGATAGACACCGCCGAAAGATGTTTCCATGGGAATGACTCCATTTCAGGACTGTACTGTCATTTGCCGGCATATTTTCAGGAAAATGAATGAGGATTGCTGTTCATCTGGCAGCTCCATTCCTGACACTAAGCAGACTGCCAGCTTCGTCCCATAGGAATAAGAATGGGTTGCCAGGTCCAGGTCAAAGAAGATGGCACTTTCTATTAATTCATCCATCAGGTCTGCCGGGATCTTTGTGACCGGTGACAGTTTTTCTACTGCCTGATGTCTTCATTATATCCATGTGTGCAGGTGAAGACTTGAATGACATTCTGAGAAAAGCCACTGCACCTCTTTTCCGCTCCAGTCTTGGTCTTTAGTGATGCCGGCTGCTGGGGGCAAAGGCTGCCCTTAAACTCAGAGTCATCTCTGCTTCTGACTTCTCTCACGGAAACTGCCGGCGCCGCACTGAATTAATCAGGCCGTTCCAGAGGAGCAGATCTTCAGAGCATTCAGAGTTGAAGACGGAGCCACGGGTCCAGGTGTGACTCTCGCTGTTGGAACATGAATAAAGCGACTATTCTCGGCGCAGTGTAAATTGAAGCACTCAAGCTTAATAAAGAATTTATGCAAACGCGTAAGTGCCATTAATCTAGGATCTGTTTCCCTGGCGCCTGTTGCATATGGAATGAGGAGGTGTTCTCCTGTGGCCTTTTACAGGGTTGTGTGATGCATTAAGTTATAGAAATGGAAGCTGTTTAAGGTCTATTAACAATGCTCGCATGCATTTGCATGGATTATTTCTGGTGTCGGCTGTTGATTTTACACGTTAAAATGAAATGGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036474 lncRNA downstream 46295 24187977 ~ 24188631 (-) True XLOC_018074
TCONS_00035617 lncRNA downstream 52938 24171668 ~ 24181988 (-) False XLOC_018073
TCONS_00035615 lncRNA downstream 75162 24152678 ~ 24159764 (-) False XLOC_018073
TCONS_00035610 lncRNA downstream 112169 24064689 ~ 24122757 (-) False XLOC_018072
TCONS_00036836 lncRNA downstream 288828 23908594 ~ 23946098 (-) True XLOC_018071
TCONS_00036475 lncRNA upstream 175544 24448007 ~ 24450177 (-) False XLOC_018077
TCONS_00036838 lncRNA upstream 175544 24448007 ~ 24454929 (-) False XLOC_018077
TCONS_00035620 lncRNA upstream 177174 24449637 ~ 24454929 (-) True XLOC_018077
TCONS_00036476 lncRNA upstream 456668 24729131 ~ 24732309 (-) True XLOC_018078
TCONS_00036839 lncRNA upstream 1035332 25307795 ~ 25311454 (-) True XLOC_018080
TCONS_00035618 mRNA downstream 51544 24181798 ~ 24183382 (-) True XLOC_018073
TCONS_00035613 mRNA downstream 51593 24151004 ~ 24183333 (-) False XLOC_018073
TCONS_00035612 mRNA downstream 52237 24149794 ~ 24182689 (-) False XLOC_018073
TCONS_00035614 mRNA downstream 69417 24152512 ~ 24165509 (-) False XLOC_018073
TCONS_00035609 mRNA downstream 212368 23974626 ~ 24022558 (-) False XLOC_018072
TCONS_00035619 mRNA upstream 163208 24435671 ~ 24443680 (-) True XLOC_018076
TCONS_00035621 mRNA upstream 544655 24817118 ~ 24963092 (-) False XLOC_018079
TCONS_00035622 mRNA upstream 545373 24817836 ~ 24963038 (-) True XLOC_018079
TCONS_00035623 mRNA upstream 1086601 25359064 ~ 25436389 (-) False XLOC_018081
TCONS_00035624 mRNA upstream 1086604 25359067 ~ 25369767 (-) False XLOC_018081
TCONS_00035616 other downstream 62786 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035611 other downstream 112169 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035595 other downstream 809272 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 986287 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035590 other downstream 1008550 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035626 other upstream 1096047 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035635 other upstream 1265117 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 1265892 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035639 other upstream 1276962 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035648 other upstream 1370217 25642680 ~ 25644837 (-) True XLOC_018090

Expression Profile

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