RNA id: TU795760


Basic Information

Item Value
RNA id TU795760
length 2993
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G699319
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33680741 ~ 33683970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCAGAAAATGTACCAGTTTAATTTTCGGTTCACACATCCATTCAATATAAAGCAAAAGCCATTTATAAGAAACATTGAACCAACGTTCCAAACCATTAAAAAGTATTGTCAGTTAAAGCAAATCCAACTACTATTCAAATATCTCAATATTCAACACAGCTTGCATACAacacacaataataataataataataataacaacaacatgtattgTGCTGAAGACATTGTGTAGTTCAATACTGATAGAAGTTTGATGGAAATCTTTTTTTGGAATTAAACCTTCGAAACATCCTCAGTATATGGCTTGTATGGTGCACATTTAGCTTGACATTTGACAGGTCCACCACATACAGTATTCATCCATTGCATATATACATTGCATCCATCACACACAAAAAGTATGGCTCACACTTGTCAAAGTGCATTATGGATCACCAGACAATATAGAAAATAAACAATTAACATGAATGTCAAAATCCGTGGAGGTTATGACCTGTTTCATTTTTTTCTTAAACGTTTGTTAGTAGCATTGCATGTTATCACGATGAGTAATGTTACAGAGATGCATTGAGTAAGGATTTTAGTGAAGCTTGGATGGACAAACAGATATTCACTGTGTGGATTTTAAAACTCTATAATAGCCCTTCGTCTCATTTCACATTAACACTGTGGATCCTAATAATTTACTGTAGAATTACATACACTTAATTCATAATTCTCTGAGGTCGGTGACTATTGCTGACTTCGGGACAAGAAAAGGCACAAGACAGGCTACTTCAGTCTAGCATAAAAAGCCCATTGACGGTTGTAGGGTTGTGGGTTTCTCTAATAAGGAAAATATGAACAGGACACATTTGTAAAGGCTTGGCCATTGTTTAGTAGCCCGAGTGCCCGTCTGTGCCATCATGCCAACTCCCTGCCACTCATTGTCAAGTGaaatgtttggcttgacaatgacctCATGCCAGTTGGCAggagcacaaactgatctgggaccaggctaattgTTTGCATGCTGCTCAACATGACATAGGCCAATTAGGCTGCGTTAACACCAGCAGACCAAATCTAATCTTTTTCCActaaattggtcttttgaccaaatCAGCTCTATTGCCAATAATTGAGCAAaacatcagaattgggctgcctgtgtaaacagccATAGTCTAAAATGGTTTCATCTCTGCATTTCCCTATCATAAAAAAAAAAGCTTCAATTCCACATACGTCTGGACAGACAGGATCGAGACAGCAGCACAACAAGTTAACGCAGATTTTCTTCcaagtcattaaaaaaaataaaaaatcaataaCAAGCGATTGTGACCTTTACCAAACAACCGTTTCTCCAATTCCATAGAACACCACATATTTCCAGAACAAAAGCCACTCACAATCCTGACATTTTGTAGATAACTTTCCAATATCGTTCTCCTGTTAATAATTAGATGAATATTATTCACCACTGAACCAAGTCAAAAAGATAGACATCAGTGTATACATGCTGATTGAGCTTTGAGAATACTCCTATAATGCCCCTTTGGTCAATGTTCATTAGCATGAAAcaatgctgcacacacacacaaactactcAAAAAAAGGGCAACACAAATTACACAGGGGTCAACACCAGTCTGAAATTGACATATTTAATCAATCATCAAACCAAGATATGGAGTGTAGATTTAATCTTGGAGTGCCTCCAAACAAAATCAGTGACACAAATATATTTGCACATTCGGATGTACGTAAGAGTATAGGAGCGAGCGACAAGGCCTTATTCGACAGAATGGTACTTTGTGTGTACTGAAATGATGACTGCTGCGAGTACATTTTTCAACGCTTACACCAACGGTGAGGGAACGAGTACACTTCAGGTAGGAGGATAGAGAATGGGACCACAGTCAGACGGAGGCGTTACTCGTCCTTAAAGAGGATAAAGGAGAACAACTAGGAGAAAAGGCTCACCAGAATCACCGCTATCCTACTACCAGAGTAGAGATCTAAAAAAAGGAAGGAATTGTTTTTGCCACTGCGTGTCACTTCAAAAATAACCATGACTTAATTTGTATTGAAAGCTGCTTCTTTGAGCAATGGACTTCTGTTAGATACAAAAAGGAACACACCTGATacatgaaaaataaagaaaactaaaCGACATactgtatcctcatcctcctgCCACACAGGCTCAAacatttGGTTGATTGGTTTATTTCTTATGGCACCGTCACTTCCTTGCCAACGAAGCACAACAACGTCCGCCAACTTACCGAAACCACTTCAAAATGAAAGCCATCACCCCCCACCGATGCTTCCCCTCGCTAAATTCCAAACCAACCTCTAGTCCCTACaggcactcctgtagatctgataGGTTTGAACAATCTTCCCCTTGCCTTCTGATAGACTAGGTGGAATTTGCGCCATATTGCTTACACCCATCCAATCATCCCGATCTACAGAGATGGATAAGGATTGGGTAGCATGGTCTCAGGTCAGTTTGTGCCGTCCTGCCAACATTGAACCACCACAGGCGTTAGGAAGACAGCGCAAAGTGATCTGGGACCCGGTTCGACATCAATTCGGAATTCAGCTTCTGTTGACAACGAACCACCAATGAAGCTCCTTTCATTCGCCCGCTCCCTCATAGGAACCAACCGGAGTGcttgtttcttcaagtgctgctTGCCAAGCTCAGTTCGTAAGGCTGAAAGGTATATCCACAATTTGTGCTTCCAACAAAAATTACAGTATAGCCAACTCATTTTTCAAAGTAAAAGGTACATGTTCTATATGTTTCAGTAAGTTGGAGGGAATGACTATGTAAATACACAAGTATTAACATCCAGTCTTTTAAATTATGTAAACAtatacatcttttttttttttgaggtcagtACATTGACCCTCTTTCGATAGAAATGTTACTGAAGCATCGTTCGGATGTTTTTTGGAGTGGACTCGTCATTCAGGTGTTTAGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795768 lncRNA downstream 30912 33649603 ~ 33649829 (-) True G699326
TU795766 lncRNA downstream 32758 33647708 ~ 33647983 (-) True G699324
TU795765 lncRNA downstream 33096 33647436 ~ 33647645 (-) True G699323
TU795747 lncRNA downstream 54172 33626239 ~ 33626569 (-) True G699311
TU795744 lncRNA downstream 58628 33621678 ~ 33622113 (-) True G699309
TU795827 lncRNA upstream 73804 33757774 ~ 33788417 (-) True G699381
TU795875 lncRNA upstream 140103 33824073 ~ 33824422 (-) True G699427
TU795877 lncRNA upstream 142449 33826419 ~ 33826658 (-) True G699429
TU795878 lncRNA upstream 143790 33827760 ~ 33827995 (-) True G699430
TU795879 lncRNA upstream 144154 33828124 ~ 33828678 (-) True G699431
XM_021612387.2 mRNA downstream 131433 33484801 ~ 33549308 (-) True LOC110529828
XM_021612386.2 mRNA downstream 222269 33454287 ~ 33458472 (-) True LOC110529827
XM_021612383.2 mRNA downstream 244864 33426517 ~ 33435877 (-) True ints9
XR_005052862.1 mRNA downstream 267732 33409803 ~ 33413009 (-) False LOC110529824
XM_021612410.2 mRNA upstream 1399 33685369 ~ 33689052 (-) True LOC110529832
XM_036985352.1 mRNA upstream 35404 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985353.1 mRNA upstream 35404 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985354.1 mRNA upstream 35404 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985355.1 mRNA upstream 35404 33719374 ~ 33822238 (-) False cdc42bpab
TU794745 other downstream 690680 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1181331 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1463192 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1463192 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 2001006 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 259052 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 339321 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 1899028 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1957385 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1957385 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile