RNA id: TCONS_00035621


Basic Information

Item Value
RNA id TCONS_00035621
length 7084
RNA type mRNA
GC content 0.44
exon number 17
gene id XLOC_018079
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 24817118 ~ 24963092 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGAGGTATTTGAGTGAGAGACGGCTGTTTTATTCACCCAGAGAGCTGGTGCTGGAGCGTAGTCAATGGGAAGGGAACGCCGCGTTGGAAAAAGCGCACACTGTTTAGCCAACTTTCAACTACACCATGGTTTGCACCTCAGTTTCGTGTGTGTGGATTATATTTTGccttcatttatgtttttatgtgaACACTGGAATAGCACAGAACACAAGAGAGGTGATCCTGCTGGATTCAAAGGCGCAGCAGACAGAGCTGGAATGGATATCGTCTCCTCCAAGCGGGTGGGAAGAGATCAGCGGCTTGGATGAAAACTACACACCCATTCGCACATACCAGGTCTGCCAGGTCATGGAGCCAAATCAGAACAATTGGCTACGGACTAACTGGATTGAAAAGGGCGATGCCCAGAGGATTTTTGTGGAGCTGAAGTTTACCTTGAGGGATTGTAACAGCCTTCCAGGGGTGGTTGGCTCTTGCAAGGAGACGTTCAACTTGTACTACCAGGAAACCGATGTGGAGGTGGGCAGGAATATAAGGGAGAGTCAGTATGTGAAAATTGACACTATAGCCGCGGACGAGAGTTTCACTCAGGGTGACCTGGGGGAAAGAAAGATGAAGCTCAACACAGAGGTGCGTATAATCGGGCCCCTTTCTCGCCGAGGCTTCTACTTAGCCTTTCAGGATGTAGGCGCCTGCATTGCTTTGGTCTCCGTCAAAGTGTATTATAAGAAGTGTTGGTCGATTATTGAGAACCTGGCCACGTTCCCAGATACAGTGACAGGTTCGGAGTTTTCATCTCTGGTGGAAGTGGAGGGCACATGCGTCAACGATGCAGAGGAGGAGGCCGACAATTCTCCCAAAATGCACTGCAGCGCAGAAGGAGAATGGCTGGTGCCCATTGGGAAATGTATATGCAAAGCTGGATTTCACCAGAAGGGAGATGCATGTGAACCCTGTGGTCGTGGATTCTACAAGTCTTCATCTCAGGATCTTCAGTGTTCCCGTTGTCCCGCACACAGTTATAATGACAGAGAGGGCTCGTGGAGATGTGACTGTGAGGACGGCTACTACAGAGCCCTCTCCGACCCCCCTTCAGTCTCCTGCACTAGGCCACCATCAGCTCCTCAGAATCTGCTTTATAATATCAACCACACAACCGTCAGCCTGGAGTGGACCCCACCAGCCGACACAGGCGGGCGAAACGACGTGACATACCGGATTATATGCCGCCGCTGCACTTGGGAGCCCGAGGAGTGCTTTCCTTGCGGGAGCAACGTTGGCTACTCACCGCAGCAGAGTGGATTAACGGACACCTACGTCACCATCACCGACCTGTTGGCTCACGCAAACTACACCTTCGAGGTCGAGGCTGTGAACGGCGTGTCTGACCTCAGCCGAACCCAACGCCTATTTGCAGCCGTCAGCATCGCAACCAGCCAAGCAGCTCCCTCTCAAGTGAGCGAGGTGATAAAGGAGCGAGTTCAGCAGCACAGTGTTCAGCTCTCCTGGCAGGAGCCCGATCAACCCAACGGCGTCATCACAGAATATGAGATCAAGTACTATGAGAAAGACCAGAAGGATCGCATTTACTCCACCGTGAAGTCAAAGTCCACTTCAGCCACAGTCAATAATCTAAAGCCCAGCACGGCGTACGTCTTTCAGATCCGAGCTTTCACCGCTGCCGGATATGGCATCTTCGGGCCCAGACTGGAGGTCACCACTAAAGAGGAATCCACTGGATCTGGTGAGCAAAAGACCACAGTGATCTCGAGTGAGCAGAATCCAGTGATCATCATTGCAGTGGTGGCAGTAGCTGGTACCATCATTCTGGTCTTCATGGTGTTCGGCTTCATCATAGGGAGAAGACACTGCGGCTACAGTAAGGCAGATCAGGAAGGGGACGAGGAGCTCTACTTTCAATTCAAATTTCCAGGCACCAAAACCTACATTGACCCTGAAACCTACGAGGACCCGAACAGGGCCGTCCATCAGTTCGCCAAAGAGCTGGACGCCTCCTGCATTAAGATTGAGAGGGTTATCGGCGCAGGAGAGTTTGGAGAGGTGTGCAGTGGACGACTCAAGCTGCCGGGGAAGAGGGACGTGTCGGTGGCCATTAAAACGCTGAAAGTAGGCTACACTGAAAAACAGAGGCGAGACTTCCTATGTGAGGCCAGCATTATGGGGCAGTTTGATCACCCTAATGTGGTGCATCTAGAGGGGGTCGTCACAAGAGGAAAACCAGTCATGATAGTAATTGAATACATGGAAAATGGCTCATTAGATGCATTCCTCAGGAAACATGATGGGCAGTTCACTGTGATTCAGTTGGTGGGAATGTTGCGCGGAATCGCAGCCGGGATGAGATACCTCTCAGACATGGGTTACGTTCATCGCGATTTAGCGGCGCGAAACATCCTTGTCAACAGCAATCTCGTATGTAAAGTGTCTGACTTCGGCCTGTCCAGAGTGATTGACGACGATCCCGAGGCTGTCTACACAACAACGGGGGGAAAGATCCCGGTTCGGTGGACGGCGATGGAAGCCATCCAGTATCGTAAATTCACATCAGCGAGTGATGTGTGGAGCTATGGGATTGTAATGTGGGAGGTCATGTCCTATGGGGAACGGCCTTACTGGGACATGTCCAATCAAGACGTCATAAAGGCTATAGAGGAGGGATATCGTCTTCCCGCCCCCATGGACTGCCCTCCTGGCCTCCATCAGCTCATGCTGGACTGCTGGCAGAAAGACAGAGCCGATCGGCCCAAATTTGACCAGATTGTAGGCATCTTGGATAAAATGATCCGCAACCCTAACACCTTAAAAACGCCAATGGGAACGTGTTTACGACCCATAAGTCCACTACTTGACCAGAACACTCCAGATTTCACCTCTTTCCGATTGGTCAGCGAGTGGTTGGAAGCCATCAAGATGGAGAGATACATGGACAACTTCACAGCCGCCGGCTACAGCTCGCTTGAATCTGTGGCTCGAATGACTATCGAGGACGTAATGAGTTTGGGAATCTCCTTGGTGGGCCATCAGAAGAAGATCATGAGCAGTATACAGACTATGAGAGCGCAGATGTTGCATCTTCACGGGACGGGCGTTCAAGTGTGATGGGCATCCACAGCCCCTTCCCAGTTGGATGAAGCAGAAGTCTCCAGGACAGCACAGCAAAGTGTGTGACACAGCAAACAAAAATCGGAAAAACtaaacatttctcaaaaaaaaaaaaaaaaaatgttccacaCCCTTCCGGTGAGATTAACCTTCCAGAACTGGCTGAACAGAATCATTCCTTTGTTTTGGCGAAGGATTTGGGTGAAGGTGCTGAAAACCAAGAGACGAGGACACAGATGAGGACAAAGAACACAGGCGGACAGACCTCCGGATGCTCTCAAGAACTCTTCACGTCACTGAGACGGAGCATTCCAGAGGATTTTTATGCTTTGTACGAACTGTCTTTATCGTCAAAAAAGATTGATTTGCTCATAGTTGCTATAGATttcattgattttgtttttttttttttttaatataaaataagcaaATCCGGTTCATAAGGAGTGAATTTGGAGATTTCGTTTGGTTTGTAATATCCACATTTAACCAATGTGGTGCGTTACTCTTCTACTCGATTGATTTTGTGTTAGCTTGTTTTCTCGGATTGTGTTACGGAACTGACAACAGGGTAAAACGTCTCATCTGGAGGGAAAGAGACAGAACCAGAGGCTGAAAGTCGACAGAGGACGTTTGTCTTCTCCAGCCAGCACTATTTACATGAAGCTCTCTCCAGACAGAAGATAAAGTCGACccgacttgtttttttttttttttatatatatatcaagcaGTAATATCCCACTGCTTGGTAATACGTGAAGCTCCTGAGGGTGGCTGGTTGTGTTTAAGAACAGCCCGAGCAGATGATTAGGTATATTTTATGATCTTACATTACAATTCAGATGTGAATTAGTACAAAGAGATTTGCTAACCACTTCAGGTGgagcttttttaaaatgtaagaagAACAATTACGGTGGCAATATTCTTTATAAGTTTATATTTACCACATGAATGGATTTATCAGTGCTGTTATTGAATGTGTCCttttttaatattgatattatttaccATAAACACGTTTCCACACAAACGGGGGGAAAACAATGTTCATTTCGGAAACAAAATCATTTGTTGGTTAAGTATCAGTTTCCTAGCCGGTTGCTGATTTTGAAATCATACAATGGTGTGGTGTAAAGGAGTAATACTGCCTTAAATCAAGTCAACTATTGCTCTTATTTTTAGGTACTTAGCTTCTTTGTGAGATTACGATTAAGTAGGGGAGAGACTGACCAACATGAGCAATAATTTGAGGTGCTGTATAGACTTTTACACACAGACTGCTTGGAAGTCAGAGGCAGTACTGTGAAATTTGATCAAAGAGAGTTGCTGAGTTTATATACTGTACGAGGATCTTGACGTTTTGGTGCATTTcttccaccttttttttttttgtgtgctgaGCTCATAGATGAGATTTATGTTGGTGTTTTAGTGCCATAACAGCCTTCCACTCTCGACTGAATGTTTCGTTGACAATTAAATGTTACGCATTTTAAGGCCCTGAAATACTTACAACAAAGTCCgttctccctttttttttttttgcttaagttAGAATTACCTGAGCAGATTTGCACCAGCTCTGCAATGCAGCACCCCAGACACgtcatacttttttttaaatagcactttaTACAGTAGATTGATTTAAAGGAAGCATCTTTATAGTATAAAAATAGTGCTTAGAATTATACTTCAATATTTACTATAAAGCATTATGGACATTTAACCTTGATGGATAGAGTAAATTAAACCAATACATCAAGTCACACCTTCTTATAATGTCATTTAAAGGCATTAACACGCCTTAAAATCCCCAAATGAATTTTgttttggtatatatatatatatatatatatatatatatttttttttttttttttttccgattttGCTTTAAGTATATCAGAGCCTTAAGTGTTAAATAGTACTGTAGACCTTTTTAGACTTGATTTGCTGGGTTGCCACCATTTTATACTATTAATGTGTCACATTTAAACACGctaaacacattttcattattctGGGAAGCCAATGCCACTTTAACCACAACAGCCGTGCCAACGTGTGGCATTTTCCTTAAGTTGAAAGAAAGCCGTTGGAGCAAAGCATCGTTGGAGGATCAGCCAAACGTTTGGCGCTTCAAAAAAAGCCATGCCATCTCCATTGTGAACCCAGCTGGTTTGTGTGTGCGTCCCTCGCGGATCATATCGTGCCCTGGTTAGAGGCCCATCTCCAATCCGCTATCCTTCCATCCCGCTAACCTCAGCATTGAGCCCACGCCAGGCCTTTGAATTGAATGCGAGCGGAAAGGCTCTCGGTCAGCACAAACCTCCCGAGCTTCAGCAGTGGCTGCAGTCACTCGGATCAGCCTCCCCGCGCTCTGATCTCACACTCCGGCCTCCCGAGGGCCCCTCACAGGCCCTTACCCTCTCCGGGGCCCCTGTAGAGACAGCAATTTGAGCCAATTTGAGATTAACGCCTGGATTCAATCAATCCCACATTGAGGCCACCGTACGGGTCAATGACAAATCTGTCaattttttttcctccttttctGCTTTGTGCCGTTTTGAACTTTTCTGGTTTGATAGTAGTGGAATTTTGGGTCAAGACAGTTTGTGCTGTGGATTGATTGAGTTCACGGTGCAGCAGGGTTTTAAAGACTTCTAGAAAGACAGTCGAAAGCCCACCCAGACAAAAGTGAAGTGGAATATTCCAAAGAGTTCAGCACTGTTGATTGTGTCAGAGTAATCACAAACCAGAGGACGATTTGTACATGTTCTAGCTGTAAaacttgtatattttatttatgattgttgtttctttttatttttcactCAAGTACTCTGTAGTGAGCTCATTGAAAATGCACTATATTTTTCTATCTCACATGCAACCGATTCTCGTCACCCTCACTCTTTCAGTTGTACATAATTTCTCATGTAGGACCAAAGAGAGCTAATAGGTTTCCATtttaggagattttttttttccttttctcttttaggttggaaaaaatgtacagtacaaatgaattgttgatttattatttatttttctgtgacaAGAGTATGGAGAGTATTCATTGGTCAAAAAGTATTTTCCCCAGTTGAGAAACTGTATGGTCATTTACCTAGACAATTTCTTGTTACAtagaccatttttttcttttgctttgtaACCTTTGTAATAGACTGTACatatatttttggaaatataATGCAATCTCTATAGATGTGTCTGTGCCTTCAATTTCTGTGTGTCTTGATTACAGTCACAATAGTATacattattcaatattttacacaatattatacaccattttaaaatcaactaaatacattttatgttgAAGTCGATGTTCCTTACTAGAAAAGTCAGTTCTTATAAATACCTATCAGTTCTTacaagtttcacaaactaatttcgagaggagcatgtgataggaCTGACTACAGCTGATgcctatcactaatcactaacaaGCCAATCGGATGattctaaattttatataaatatccagccAAAACTTTATTCCTCATTTTAGTTTTGGAAGACCCCCCATCCATCCCTTCTCCTCAATTCTAAGattaggcgacacggtggctcagtggctagcactgtcaccccacagcaagaaggccatTGGTTCAAACAGTAGCTGAGCCAGTCGACActctctgtgcagagtttgcatgttcttatcGTGTTCGTGAACACACGTCATGTGTTCACTTTCAACATGATtttggatgcaatatgtgaatagcTCCGTACAGATTTACCCTAAGAGGTAGTGTCTGAAGGAAAAGGCGTGTTCATGTTTTTACTGGAACCGGCACTTCATATGTCAATGCgttcagctggatgttttcattcacttttaCTCActgtgctgtgttacacactgcatggaaagtcattttcaaaaacccataataggggcttt

Function

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007411 axon guidance biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0005003 ephrin receptor activity molecular_function
GO:0005005 transmembrane-ephrin receptor activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
ko04360 Axon guidance
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-030131-3745 Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in axon guidance; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in several structures, including forebrain midbrain boundary neural keel; forebrain midbrain boundary neural rod; hindbrain neural keel; mesoderm; and nervous system. Orthologous to human EPHA7 (EPH receptor A7).

Ensembl:

ensembl_id ENSDART00000159122

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036476 lncRNA downstream 84809 24729131 ~ 24732309 (-) True XLOC_018078
TCONS_00036838 lncRNA downstream 362189 24448007 ~ 24454929 (-) False XLOC_018077
TCONS_00035620 lncRNA downstream 362189 24449637 ~ 24454929 (-) True XLOC_018077
TCONS_00036475 lncRNA downstream 366941 24448007 ~ 24450177 (-) False XLOC_018077
TCONS_00036837 lncRNA downstream 544655 24234926 ~ 24272463 (-) True XLOC_018075
TCONS_00036839 lncRNA upstream 344703 25307795 ~ 25311454 (-) True XLOC_018080
TCONS_00036840 lncRNA upstream 437994 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00035638 lncRNA upstream 585333 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00035640 lncRNA upstream 637013 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00036841 lncRNA upstream 702957 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035619 mRNA downstream 373438 24435671 ~ 24443680 (-) True XLOC_018076
TCONS_00035618 mRNA downstream 633736 24181798 ~ 24183382 (-) True XLOC_018073
TCONS_00035613 mRNA downstream 633785 24151004 ~ 24183333 (-) False XLOC_018073
TCONS_00035612 mRNA downstream 634429 24149794 ~ 24182689 (-) False XLOC_018073
TCONS_00035614 mRNA downstream 651609 24152512 ~ 24165509 (-) False XLOC_018073
TCONS_00035623 mRNA upstream 395972 25359064 ~ 25436389 (-) False XLOC_018081
TCONS_00035624 mRNA upstream 395975 25359067 ~ 25369767 (-) False XLOC_018081
TCONS_00035625 mRNA upstream 396016 25359108 ~ 25412181 (-) False XLOC_018081
TCONS_00035627 mRNA upstream 477422 25440514 ~ 25445237 (-) False XLOC_018082
TCONS_00035628 mRNA upstream 477422 25440514 ~ 25445246 (-) True XLOC_018082
TCONS_00035616 other downstream 644978 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035611 other downstream 694361 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035595 other downstream 1391464 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 1568479 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035590 other downstream 1590742 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035626 other upstream 405418 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035635 other upstream 574488 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 575263 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035639 other upstream 586333 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035648 other upstream 679588 25642680 ~ 25644837 (-) True XLOC_018090

Expression Profile

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