RNA id: TU796151



Basic Information


Item Value
RNA id TU796151
length 410
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G699675
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34272375 ~ 34272784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


actcctgtgttatctaggctgtgtgcttagggtctttgtcctgttggaaggtgaaccatcacccccagtctgaggtcctgaccactctggagcaggttttcaacaaggatctctctgtactttgctccgttcatctttccctcgatcctgactagtctcccagtccctgccactgaaaaatatccccacagcatgatgctgccaccactatgcttcactgcagggatggtgccaggtttcctccagaagtgatgtttggcattcaggccaaagagttcaaacttgctttcatcagatcagagagtcttgtttttcatggtctgagagtcctttaggtggcctttggcaaattccaagcaggatgtcatgtgccttttactgaagagtggcttccatctggccgctaccat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU796129 lncRNA upstream 11166 34259872 ~ 34261209 (+) False G699664
TU796130 lncRNA upstream 11166 34260625 ~ 34261209 (+) True G699664
TU796126 lncRNA upstream 15121 34255945 ~ 34257254 (+) True G699662
TU796124 lncRNA upstream 18276 34253732 ~ 34254099 (+) True G699660
TU796120 lncRNA upstream 23468 34248642 ~ 34248907 (+) True G699656
TU796207 lncRNA downstream 98125 34370909 ~ 34371137 (+) True G699727
TU796204 lncRNA downstream 119600 34392384 ~ 34392992 (+) True G699724
TU796205 lncRNA downstream 120297 34393081 ~ 34393898 (+) True G699725
TU796381 lncRNA downstream 125881 34398665 ~ 34399818 (+) True G699878
TU796417 lncRNA downstream 234401 34507185 ~ 34508791 (+) True G699895
XM_021612445.2 mRNA upstream 53696 34178298 ~ 34218679 (+) False LOC110529847
XM_021612434.2 mRNA downstream 101952 34374736 ~ 34387036 (+) True LOC110529842
XM_021612450.2 mRNA downstream 281008 34553792 ~ 34556069 (+) False LOC110529849
XM_036985374.1 mRNA downstream 526531 34799315 ~ 35163860 (+) True LOC110529233
NM_001246329.2 mRNA downstream 1022243 35295027 ~ 35318460 (+) True LOC100653435
XM_021612456.2 mRNA downstream 1064195 35336979 ~ 35340123 (+) False LOC110529852
TU796067 other upstream 144074 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 4479628 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 5334102 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 5334102 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 5566623 28704850 ~ 28705752 (+) True G693207
TU797136 other downstream 1182064 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 1340380 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 1631265 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 2427654 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 2785561 37058345 ~ 37059223 (+) False G702687

Expression Profile