RNA id: TCONS_00035624


Basic Information

Item Value
RNA id TCONS_00035624
length 1599
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_018081
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25359064 ~ 25436389 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTAATTATGTGAAGATGACCACAGAATGTGATCCAAGCCAGCAATGGTGTGCTGACCTGCTTAGTTTAGACTCTATGTGCACTGAGGAGAGGAAGAGGCAAGGCTACATCCATGAGCTCATTCAGACAGAAGAGTCTTACCTGGAGGACCTGGAGCTGGCAGTGGAGGTGTTTTATAAGCCAATGGCAGAGTCGGGACGGCTGACCGAGGCTGAGATCAGCATGATCTTTGTGAACTGGCGTGAATTGATCATGTGCAGCACCAAACTCCTAAAAGCTCTGCGTGTGCGTAAGAAGACAGCAGGTGAGCGAATGCCCGTGCAGGTGGTTGGTGATATCTTGTCCTCTGAGCTCTCTCACATGCAGGCTTACATTCGCTTCTGCAGCTGCCAGCTCAACGCAGCTGCTCTGTTGCAGCAGAAAACAGACAAATCACTCGACTTCAAACTCTTCCTCAAGAAAATTGCCAGTAATTACCGCTGTAAAGGAATGCCACTGTCCAGCTTTCTCCTGAAGCCCATGCAGAGGATCACACGATACCCACTGCTGATCAAAAACATTCTGGAAAACACTCCTCCGGCTCACGCTGACCACTCCAATCTGCAGGCGGCGCTGGAGCAGGCGGAGGAGCTTTGCTCACAGGTGAACGAGGCTGTGAGGGAGAAAGAGAACTCCGACCGACTGGAGTGGATCCAGAACCACGTGTTGTGTGACGGAGTCATTGAGCACCTTGTTTTTAACTCTCTGACGAACTGCCTGGGCCCTCGAAAACTGCTGCACAGCGGCAAACTGCATAAGACCAAGAGCAGCAAAGAGCTCTGGGCCCTGCTGTTCAATGACTTCCTGCTCCTCACATACACCTCCAAACAGTTCTCATCCAGCCCAGACAAACTCTTCAATCCCAACTCCAACACACAGTACAAGATGTACAAGACGCCAGTGTTTCTGAATGAGGTCTTGGTGAAAATGCCCTCTGACCCGTCCAGCGATGACCCAGTTTTCCACATTTCACACATTGATCGTGTTTACACACTCAAGACTGACACTATCAATGAGAGGACGACGTGGGTGCAGAAGATCAAAGCAGCATCTGATCACTTTATAGAGACGGAGAAGCTGAAGAGAGAGAAGGCGTATCAAGCTCGCTCTCAGAAGAACAGTGGCATCGGTCGACTGCTGGTAACAGTGCTGGAAGCCACAGAGCTGAAGCCCTGCAAACCCAACGGGAAGAGTAACCCATACTGTGAACTAACCATGGGCGCCCAGTGCTACACGTCCCGGCATCAGCCCGACACGCTCAACCCAAAATGGAGCTTCAACTGCCAGTTCTTCATCAAAGACTTGTACCAGGATGTCCTGTGCCTCACTGTCTTTGAGAGGGACCAGTTCTCTCCTGATGATTTTCTAGGTCGAACTGAAGTTCCTGTAGCGACAATAAAAAAAGATCAAGATGGTAAAGGGCCACTGGTTCGACGTCTGCTGCTTCATGAAGTCCCGACTGGAGAGGTTAAAGTGAGGCTTGATCTGCAGCTCTATGAACAAACACCTCACGTATGAACTGAGAAGTGCAACATTAAACGCGTCACTTCACCAGTTTC

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0016197 endosomal transport biological_process
GO:0150007 clathrin-dependent synaptic vesicle endocytosis biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0005737 cytoplasm cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-84 Predicted to enable molecular adaptor activity. Predicted to be involved in clathrin-dependent synaptic vesicle endocytosis. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cell projection and synapse. Predicted to be active in several cellular components, including clathrin-coated pit; intracellular vesicle; and presynaptic membrane. Orthologous to human ITSN2 (intersectin 2).

Ensembl:

ensembl_id ENSDART00000180278

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036839 lncRNA downstream 47613 25307795 ~ 25311454 (-) True XLOC_018080
TCONS_00036476 lncRNA downstream 626758 24729131 ~ 24732309 (-) True XLOC_018078
TCONS_00036838 lncRNA downstream 904138 24448007 ~ 24454929 (-) False XLOC_018077
TCONS_00035620 lncRNA downstream 904138 24449637 ~ 24454929 (-) True XLOC_018077
TCONS_00036475 lncRNA downstream 908890 24448007 ~ 24450177 (-) False XLOC_018077
TCONS_00036840 lncRNA upstream 31319 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00035638 lncRNA upstream 178658 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00035640 lncRNA upstream 230338 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00036841 lncRNA upstream 296282 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035653 lncRNA upstream 341024 25710791 ~ 25712415 (-) True XLOC_018092
TCONS_00035621 mRNA downstream 395975 24817118 ~ 24963092 (-) False XLOC_018079
TCONS_00035622 mRNA downstream 396029 24817836 ~ 24963038 (-) True XLOC_018079
TCONS_00035619 mRNA downstream 915387 24435671 ~ 24443680 (-) True XLOC_018076
TCONS_00035618 mRNA downstream 1175685 24181798 ~ 24183382 (-) True XLOC_018073
TCONS_00035613 mRNA downstream 1175734 24151004 ~ 24183333 (-) False XLOC_018073
TCONS_00035627 mRNA upstream 70747 25440514 ~ 25445237 (-) False XLOC_018082
TCONS_00035628 mRNA upstream 70747 25440514 ~ 25445246 (-) True XLOC_018082
TCONS_00035629 mRNA upstream 103289 25473056 ~ 25481306 (-) False XLOC_018083
TCONS_00035630 mRNA upstream 103289 25473056 ~ 25486384 (-) True XLOC_018083
TCONS_00035631 mRNA upstream 145492 25515259 ~ 25522911 (-) False XLOC_018084
TCONS_00035616 other downstream 1186927 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035611 other downstream 1236310 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035595 other downstream 1933413 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 2110428 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035590 other downstream 2132691 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035635 other upstream 167813 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 168588 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035639 other upstream 179658 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035648 other upstream 272913 25642680 ~ 25644837 (-) True XLOC_018090
TCONS_00035651 other upstream 296282 25666049 ~ 25709349 (-) False XLOC_018091

Expression Profile

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