RNA id: TCONS_00035626


Basic Information

Item Value
RNA id TCONS_00035626
length 611
RNA type processed_transcript
GC content 0.39
exon number 2
gene id XLOC_018081
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25359064 ~ 25436389 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCCAATAAGGACGAGATGAGCTTCCAGAAAGGTCAGCTGATCACCGTACTGAACAAGGACAACCCTGACTGGTGGAAAGGAGAGGTCGCAGGGGTCACAGGGCTGTTTCCAACTAATTATGTGAAGATGACCACAGAATGTGATCCAAGCCAGCAATGATGATAGCTCTGGCCAATGCTTCCTCTTCCTCTCTTTTcttggccaatcagaacacagcTCTGGTCCACGATGCAGCCTCAAGACTCAGCCTTGACTAGATTTCTTTGGATTTATCCCCTCCCCTTCAGCTTTTTCTGTTTAAACTAtgctaaaaatgaaaacaaacacatctgTTTGTTTCCACTGGCTTTCAGAcatatatattgttttctgttAAGTTGGGACATTTTAGACGCCACTgcttttttctctcatttttttaaatgggtaAAATAAAGGGAAATCTCATGAGATACTGAATTTTCcttaaacatcttttaaaaataatacttcTCCATACTATGTAaagtatttttctattttaaagtaTAAATAGATATTTGCAGGAACTAAGCTGCCAAAATGGCTCCTTGGATTTCTGATGTAATAAAAAAGAACCTAGTACCTTT

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0016197 endosomal transport biological_process
GO:0150007 clathrin-dependent synaptic vesicle endocytosis biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0005737 cytoplasm cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-84 Predicted to enable molecular adaptor activity. Predicted to be involved in clathrin-dependent synaptic vesicle endocytosis. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cell projection and synapse. Predicted to be active in several cellular components, including clathrin-coated pit; intracellular vesicle; and presynaptic membrane. Orthologous to human ITSN2 (intersectin 2).

Ensembl:

ensembl_id ENSDART00000125142

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036839 lncRNA downstream 57056 25307795 ~ 25311454 (-) True XLOC_018080
TCONS_00036476 lncRNA downstream 636201 24729131 ~ 24732309 (-) True XLOC_018078
TCONS_00036838 lncRNA downstream 913581 24448007 ~ 24454929 (-) False XLOC_018077
TCONS_00035620 lncRNA downstream 913581 24449637 ~ 24454929 (-) True XLOC_018077
TCONS_00036475 lncRNA downstream 918333 24448007 ~ 24450177 (-) False XLOC_018077
TCONS_00036840 lncRNA upstream 31206 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00035638 lncRNA upstream 178545 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00035640 lncRNA upstream 230225 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00036841 lncRNA upstream 296169 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035653 lncRNA upstream 340911 25710791 ~ 25712415 (-) True XLOC_018092
TCONS_00035621 mRNA downstream 405418 24817118 ~ 24963092 (-) False XLOC_018079
TCONS_00035622 mRNA downstream 405472 24817836 ~ 24963038 (-) True XLOC_018079
TCONS_00035619 mRNA downstream 924830 24435671 ~ 24443680 (-) True XLOC_018076
TCONS_00035618 mRNA downstream 1185128 24181798 ~ 24183382 (-) True XLOC_018073
TCONS_00035613 mRNA downstream 1185177 24151004 ~ 24183333 (-) False XLOC_018073
TCONS_00035627 mRNA upstream 70634 25440514 ~ 25445237 (-) False XLOC_018082
TCONS_00035628 mRNA upstream 70634 25440514 ~ 25445246 (-) True XLOC_018082
TCONS_00035629 mRNA upstream 103176 25473056 ~ 25481306 (-) False XLOC_018083
TCONS_00035630 mRNA upstream 103176 25473056 ~ 25486384 (-) True XLOC_018083
TCONS_00035631 mRNA upstream 145379 25515259 ~ 25522911 (-) False XLOC_018084
TCONS_00035616 other downstream 1196370 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035611 other downstream 1245753 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035595 other downstream 1942856 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 2119871 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035590 other downstream 2142134 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035635 other upstream 167700 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 168475 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035639 other upstream 179545 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035648 other upstream 272800 25642680 ~ 25644837 (-) True XLOC_018090
TCONS_00035651 other upstream 296169 25666049 ~ 25709349 (-) False XLOC_018091

Expression Profile

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