RNA id: TU797223


Basic Information

Item Value
RNA id TU797223
length 464
lncRNA type read_through
GC content 0.41
exon number 2
gene id G700651
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35553122 ~ 35608232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggCTGCAGTTTATTTTTGTCAATCTCACTcctttgtccataataatctcatgttGTCGGCTGTATCCGCACTGCaaactgttggctagagcgcacgtgccaaaaccagagtgggcacagtCGCTATATAATGCTACATTTgatgtgacaaaaccatcagagTTAAATGCGATGGAAACCAATGTACAGTGTATTTTTTAATTTATatttggtacatgggaatttaactgcAAAAGTTTTtatttatgtgcactacgtcataaCCCACAGCCTTTAAAATCGGCAACAAGTCAAcgtgatggaaacatctctggtgagaAAATTCACATTGATGCGAATATTCTCAAATTTGCATACAATCtatcgccaattggatggaaacctagctagtgtctCCGTTTCACAGATTGGGAACACTAATGCCCACAAGGGACTGGGTGAAGCCGTTTATCggtggtgtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU797172 lncRNA upstream 101607 35451418 ~ 35451621 (+) True G700617
TU797164 lncRNA upstream 122105 35430904 ~ 35431123 (+) True G700609
TU797109 lncRNA upstream 240287 35306934 ~ 35312941 (+) False G700559
TU797268 lncRNA downstream 5212 35613444 ~ 35618274 (+) True G700687
TU797292 lncRNA downstream 44806 35653038 ~ 35655716 (+) False G700707
TU797293 lncRNA downstream 44806 35653038 ~ 35655716 (+) False G700707
TU797295 lncRNA downstream 44806 35653038 ~ 35655716 (+) False G700707
TU797296 lncRNA downstream 44806 35653038 ~ 35655716 (+) False G700707
XM_021612472.2 mRNA upstream 14891 35514934 ~ 35538337 (+) False znf410
XM_021612471.2 mRNA upstream 14891 35514935 ~ 35538337 (+) True znf410
XM_021612468.2 mRNA upstream 47397 35502866 ~ 35505831 (+) False cipcb
XM_021612469.2 mRNA upstream 47397 35502866 ~ 35505831 (+) True cipcb
XM_021612465.2 mRNA upstream 50569 35489254 ~ 35502659 (+) True LOC110529858
XM_036985394.1 mRNA downstream 246728 35854960 ~ 35891416 (+) False LOC110529234
XM_036985391.1 mRNA downstream 246736 35854968 ~ 35901652 (+) False LOC110529234
XR_005052867.1 mRNA downstream 246737 35854969 ~ 35900757 (+) False LOC110529234
XR_005052866.1 mRNA downstream 246738 35854970 ~ 35900968 (+) False LOC110529234
XM_036985393.1 mRNA downstream 246740 35854972 ~ 35901652 (+) False LOC110529234
TU797136 other upstream 91188 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 1424927 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 5760481 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 6614955 28930760 ~ 28938273 (+) False cdca4
TU797266 other downstream 4932 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 295817 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 1092206 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 1450113 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 1640505 37248737 ~ 37249809 (+) True G702817

Expression Profile