RNA id: TU797373


Basic Information

Item Value
RNA id TU797373
length 246
lncRNA type intronic
GC content 0.41
exon number 1
gene id G700765
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35752837 ~ 35753082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgatgtttctaaaactgtttgaatgatgtatgtgagtataacagaactcatatggcagacaaaaacctgagaagaaatccaaccaggaagtgggaaatctgaagtttgtagtttttcaagtcattgcctatcgaatatacagtgtctatggggtaatattgcacttcctacggcttccactagatgtcaacagtctttggaaccttgtttgatgcttctactgtgaaggaggggggaaagggagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU797369 lncRNA upstream 4711 35747880 ~ 35748126 (+) True G700761
TU797358 lncRNA upstream 15569 35736842 ~ 35737268 (+) True G700750
TU797357 lncRNA upstream 16239 35736313 ~ 35736598 (+) True G700749
TU797354 lncRNA upstream 23416 35729170 ~ 35729421 (+) True G700746
TU797302 lncRNA upstream 97121 35653038 ~ 35655716 (+) False G700707
TU797375 lncRNA downstream 1063 35754145 ~ 35754346 (+) True G700767
TU797385 lncRNA downstream 13674 35766756 ~ 35767076 (+) True G700777
TU797386 lncRNA downstream 15273 35768355 ~ 35768586 (+) True G700778
TU797437 lncRNA downstream 92737 35845819 ~ 35846302 (+) True G700827
TU797227 lncRNA downstream 100468 35853550 ~ 35854673 (+) False G700652
XM_021612478.2 mRNA upstream 156433 35574306 ~ 35596404 (+) False LOC110529863
XM_036985379.1 mRNA upstream 156433 35574306 ~ 35596404 (+) False LOC110529863
XM_021612480.2 mRNA upstream 156433 35578590 ~ 35596404 (+) True LOC110529863
XM_021612477.2 mRNA upstream 156434 35574306 ~ 35596403 (+) False LOC110529863
XM_021612471.2 mRNA upstream 214500 35514935 ~ 35538337 (+) True znf410
XM_036985394.1 mRNA downstream 101878 35854960 ~ 35891416 (+) False LOC110529234
XM_036985391.1 mRNA downstream 101886 35854968 ~ 35901652 (+) False LOC110529234
XR_005052867.1 mRNA downstream 101887 35854969 ~ 35900757 (+) False LOC110529234
XR_005052866.1 mRNA downstream 101888 35854970 ~ 35900968 (+) False LOC110529234
XM_036985393.1 mRNA downstream 101890 35854972 ~ 35901652 (+) False LOC110529234
TU797266 other upstream 138171 35613164 ~ 35614666 (+) True G700685
TU797136 other upstream 290797 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 1624536 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 5960090 29790997 ~ 29792747 (+) True G694036
TU789469 other upstream 6814564 28935489 ~ 28938273 (+) True cdca4
TU797474 other downstream 150967 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 947356 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 1305263 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 1495655 37248737 ~ 37249809 (+) True G702817
TU800686 other downstream 2017782 37770864 ~ 37771635 (+) True G703835

Expression Profile